Browse Element(s) Details


Os.10215.1.S1_at

Description gb:D13817.1
DB_XREF= gi:427592
TID=Os.10215.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10215 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for lactate dehydrogenase, complete cds.
PROD=lactate dehydrogenase
FL= gb:AK105416.1 gb:AK103257.1 gb:D13817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0151011/11L-lactate dehydrogenase A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01460NANA2+269817..271352retrotransposon protein, putative, unclassified
LOC_Os02g01470NANA2+271926..273503retrotransposon protein, putative, unclassified
LOC_Os02g01480Os.50997.1.A1_x_at11/112+274455..277257expressed protein
LOC_Os02g01480Os.54334.1.S1_at10/112+274455..277257expressed protein
LOC_Os02g01490NANA2+279583..285795expressed protein
LOC_Os02g01500Os.51720.1.S1_at11/112+287571..293885pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os02g01510Os.10215.1.S1_at11/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01510OsAffx.28164.2.S1_at2/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01520Os.50278.1.S1_at10/112+300074..302819IQ calmodulin-binding motif family protein, expressed
LOC_Os02g01530Os.49728.1.S1_at4/112+304089..304849hypothetical protein
LOC_Os02g01540Os.6938.1.A1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01540OsAffx.11860.1.S1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01550Os.49728.1.S1_at11/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01550OsAffx.19489.2.S1_x_at2/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01560Os.12238.2.S1_x_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01560Os.12238.1.S1_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01570NANA2+321074..327184retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005739cellular_componentmitochondrion
GO:0042579cellular_componentmicrobody
GO:0004457molecular_functionlactate dehydrogenase activity
GO:0016615molecular_functionmalate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10215.1.S1_at--185--6151Chr02:298638..298662 (25 bp)
GAGGTGATCAGCCTCAAGGGCTACA
LOC_Os02g01510
Os.10215.1.S1_at--639--1391Chr02:298888..298912 (25 bp)
AGACGCTCTGGGAGAACTGCCAGCT
LOC_Os02g01510
Os.10215.1.S1_at--370--4771Chr02:298910..298934 (25 bp)
GCTGCTCGACCTCTAATAAATCTTA
LOC_Os02g01510
Os.10215.1.S1_at--586--4011Chr02:298951..298975 (25 bp)
CGTCGTCTCGTCACGGAATTAATTA
LOC_Os02g01510
Os.10215.1.S1_at--688--9951Chr02:298979..299003 (25 bp)
TACCTACTCCGTACTTAGCTAGCTA
LOC_Os02g01510
Os.10215.1.S1_at--447--2911Chr02:299011..299035 (25 bp)
AAGGATTCATTGATCACTACAAGAG
LOC_Os02g01510
Os.10215.1.S1_at--1004--2211Chr02:299029..299053 (25 bp)
ACAAGAGTGATCGACTCGACTGTAG
LOC_Os02g01510
Os.10215.1.S1_at--630--3791Chr02:299043..299067 (25 bp)
CTCGACTGTAGTATGTGTGTGCAAT
LOC_Os02g01510
Os.10215.1.S1_at--454--7351Chr02:299061..299085 (25 bp)
GTGCAATATAATGTGCTGTCTATCA
LOC_Os02g01510
Os.10215.1.S1_at--1111--7291Chr02:299073..299097 (25 bp)
GTGCTGTCTATCAACAACTACTAGT
LOC_Os02g01510
Os.10215.1.S1_at--208--9331Chr02:299111..299135 (25 bp)
TCGAACCAGGGAACTTTTTAATGAT
LOC_Os02g01510
Target Sequence 
GAGGTGATCAGCCTCAAGGGCTACACCTCCTGGGCCATCGGCTACTCCGTCGCCAGCCTCGCCGCCTCCCTCCTCCGCGA
CCAGCACCGCATCCACCCCGTCTCCGTCCTCGCCTCCGGCTTCCACGGCATCCCCCAAGACCACGAGGTCTTCCTCAGCC
TCCCCGCCCGCCTCGGCCGCGCCGGCGTCCTCGGCGTCGCCGAGATGGAGCTCACCGAGGAGGAGGCCCGCCGCCTCCGC
CGCTCCGCCAAGACGCTCTGGGAGAACTGCCAGCTGCTCGACCTCTAATAAATCTTATTATTATCATCGTCGTCGTCGTC
TCGTCACGGAATTAATTAAAGTACCTACTCCGTACTTAGCTAGCTACAATAATAAGGATTCATTGATCACTACAAGAGTG
ATCGACTCGACTGTAGTATGTGTGTGCAATATAATGTGCTGTCTATCAACAACTACTAGTATTGTCATTTTTTTCGAACC
AGGGAACTTTTTAATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis