Browse Element(s) Details


Os.10227.1.S1_at

Description gb:AU081283
DB_XREF= gi:6431631
DB_XREF=AU081283
CLONE=E1407_4Z
TID=Os.10227.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.10227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046E05.30 (P0046E05.30), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5488011/11prkcsh-prov protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54830OsAffx.22699.1.S1_x_at3/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830Os.52731.1.S1_at1/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830OsAffx.8201.1.S1_x_at1/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54850Os.42099.1.S1_at10/111+31877510..31879858F-box domain containing protein, expressed
LOC_Os01g54860Os.6033.1.S1_at11/111+31879749..318836853-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os01g54870Os.11498.1.S1_at11/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54870Os.9361.1.S1_s_at1/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54880Os.10227.1.S1_at11/111+31888240..31891006prkcsh-prov protein, putative, expressed
LOC_Os01g54890OsAffx.21616.1.S1_s_at11/111+31894650..31895589AP2 domain containing protein, expressed
LOC_Os01g54900Os.53935.1.S1_at11/111+31895859..31902459lipid-A-disaccharide synthase family protein, expressed
LOC_Os01g54910Os.7311.1.S1_at11/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54910Os.42095.1.S1_x_at10/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54920Os.5664.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.2.S1_x_at8/111+31911961..31915903expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10227.1.S1_at--1024--6471Chr01:31888598..31888622 (25 bp)
GATACTCATTTGCAATCCTCGAAGT
LOC_Os01g54880
Os.10227.1.S1_at--250--9211Chr01:31888572..31888596 (25 bp)
TCCAACTCTCCAAGGATGACGGGAA
LOC_Os01g54880
Os.10227.1.S1_at--122--5331Chr01:31888534..31888558 (25 bp)
GAAGGGATTTACACGCTTGCTCATC
LOC_Os01g54880
Os.10227.1.S1_at--1154--10711Chr01:31888518..31888542 (25 bp)
TTGCTCATCGAGACGTCTGGAACAT
LOC_Os01g54880
Os.10227.1.S1_at--642--6551Chr01:31888456..31888480 (25 bp)
GATTATGTGTTATTTTTGCCCGTAT
LOC_Os01g54880
Os.10227.1.S1_at--22--10291Chr01:31888442..31888466 (25 bp)
TTTGCCCGTATTTTAGGTCTCCTCA
LOC_Os01g54880
Os.10227.1.S1_at--447--1031Chr01:31888428..31888452 (25 bp)
AGGTCTCCTCAGCAGAGTTGCTGGT
LOC_Os01g54880
Os.10227.1.S1_at--665--3091Chr01:31888348..31888372 (25 bp)
AATATGGCATCAGCTGGCGACGCAT
LOC_Os01g54880
Os.10227.1.S1_at--107--1831Chr01:31888329..31888353 (25 bp)
ACGCATTATTGCGAGGCCTTCCTAA
LOC_Os01g54880
Os.10227.1.S1_at--677--6211Chr01:31888317..31888341 (25 bp)
GAGGCCTTCCTAAACTTCTCTGTAA
LOC_Os01g54880
Os.10227.1.S1_at--442--3651Chr01:31888303..31888327 (25 bp)
CTTCTCTGTAACTGTGATTCTGTGA
LOC_Os01g54880
Target Sequence 
GATACTCATTTGCAATCCTCGAAGTCTCCAACTCTCCAAGGATGACGGGAAACTGGAGATAGAAGAAGGGATTTACACGC
TTGCTCATCGAGACGTCTGGAACATCAAGTCGAGGAAAAAAGGCATCACGTTGTATGAGTACGATTATGTGTTATTTTTG
CCCGTATTTTAGGTCTCCTCAGCAGAGTTGCTGGTNGACCAAGGCCAGGAGATGATGAAATCCATGTAGAGATGTAGGAT
AAACTACGTGAATATGGCATCAGCTGGCGACGCATTATTGCGAGGCCTTCCTAAACTTCTCTGTAACTGTGATTCTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis