Browse Element(s) Details


Os.10238.1.S1_at

Description gb:AK066908.1
DB_XREF= gi:32976926
TID=Os.10238.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092D04, full insert sequence.
FL= gb:AK066908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3981411/11Cyanogenic beta-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39750NANA4+23470442..23472169transposon protein, putative, unclassified
LOC_Os04g39760NANA4+23472816..23475847retrotransposon protein, putative, unclassified
LOC_Os04g39770OsAffx.26393.1.S1_at11/114+23478110..23478796hypothetical protein
LOC_Os04g39780OsAffx.4032.1.S1_x_at11/114+23479565..23488249AMP-binding enzyme family protein, expressed
LOC_Os04g39780OsAffx.4032.1.S1_at11/114+23479565..23488249AMP-binding enzyme family protein, expressed
LOC_Os04g39800NANA4+23491058..23491324hypothetical protein
LOC_Os04g39814Os.10238.1.S1_at11/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.26395.1.S1_x_at10/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.14210.1.S1_at4/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.18631.1.A1_at1/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39830OsAffx.9230.1.S1_x_at1/114+23506114..23507947hypothetical protein
LOC_Os04g39840Os.10324.2.S1_at11/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840OsAffx.14210.1.S1_at3/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840OsAffx.26395.1.S1_x_at2/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39840Os.15766.1.S1_at1/114+23509148..23512832Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39850NANA4+23513743..23514420expressed protein
LOC_Os04g39864OsAffx.14211.1.S1_at10/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864OsAffx.14210.1.S1_at9/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39864OsAffx.26395.1.S1_x_at2/114+23516223..23523475Non-cyanogenic beta-glucosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10238.1.S1_at--905--4791Chr04:23497239..23497263 (25 bp)
GCTCCGTGAATTGTTGCTTTATATC
LOC_Os04g39814
Os.10238.1.S1_at--452--3031Chr04:23497199..23497223 (25 bp)
AATCCTACCATCTTTATTACTGAAA
LOC_Os04g39814
Os.10238.1.S1_at--1142--10751Chr04:23496682..23496706 (25 bp)
TTGAGTGGGCGGATGGCTACACACT
LOC_Os04g39814
Os.10238.1.S1_at--469--9851Chr04:23496665..23496689 (25 bp)
TACACACTCCGGTTTGGGCTAAACT
LOC_Os04g39814
Os.10238.1.S1_at--530--7991Chr04:23496622..23496646 (25 bp)
GGATGAAGAGACACCCCAAGAATTC
LOC_Os04g39814
Os.10238.1.S1_at--146--2171Chr04:23496612..23496636 (25 bp)
ACACCCCAAGAATTCAGCCCATTGG
LOC_Os04g39814
Os.10238.1.S1_at--741--2431Chr04:23496552..23496576 (25 bp)
AAAAGAGTCGCACGCATTGCCTTCT
LOC_Os04g39814
Os.10238.1.S1_at--431--5491Chr04:23496516..23496540 (25 bp)
GAACATCGAAATTGAGTGTCACAGA
LOC_Os04g39814
Os.10238.1.S1_at--76--711Chr04:23496487..23496511 (25 bp)
ATGAGTTTGAGATGTGCTTCTTTGT
LOC_Os04g39814
Os.10238.1.S1_at--1007--851Chr04:23496460..23496484 (25 bp)
AGGCTATACAAGAGTAAACTTCACA
LOC_Os04g39814
Os.10238.1.S1_at--590--1111Chr04:23496369..23496393 (25 bp)
AGTGATTCACATTTTCTCTAAGAAA
LOC_Os04g39814
Target Sequence 
GCTCCGTGAATTGTTGCTTTATATCAAGGAAAACTACGGCAATCCTACCATCTTTATTACTGAAAATGGTGTTGATGAAG
TCAATAACAAGACCATGCCACTCNAAGGAGGCCCNTGAATNNATAATACGNAGGATAGAATNATTATCACAANGNNNCNT
TCTCGCCCTGCGAAANTGCTATGAGGGATGGAGCAAACNTGAAGGGGNNTNCTTTGCATGGTCTCTGCTTGACNAACTTT
GAGTGGGCGGATGGCTACACACTCCGGTTTGGGCTAAACTTTGTGGATTACGATGATGGGATGAAGAGACACCCCAAGAA
TTCAGCCCATTGGTTCAAGAAGTTCCTCCGAGAAATGAAACAGGGATGAAAAGAGTCGCACGCATTGCCTTCTTTTTTTT
CATTGAACATCGAAATTGAGTGTCACAGATGAAATGAGTTTGAGATGTGCTTCTTTGTTTAGGCTATACAAGAGTAAACT
TCACAAAACTACACGTTTTGTTGTCCAAGTTACAATAAAACCACACAAATTATTAGAAGCAACAGATGACAAGTGATTCA
CATTTTCTCTAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis