Browse Element(s) Details


Os.10322.1.S1_s_at

Description gb:CR286877
DB_XREF= gi:44673443
DB_XREF=CR286877
CLONE=p721g05p3
TID=Os.10322.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.10322 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3817011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38130Os.10733.1.S1_at11/117+22872563..22874011Polygalacturonase inhibitor 1 precursor, putative, expressed
LOC_Os07g38140Os.28645.1.S1_at10/117+22876832..22877600expressed protein
LOC_Os07g38150Os.48079.1.S1_at11/117+22878723..22880371expressed protein
LOC_Os07g38160Os.17059.1.S1_at11/117+22880556..22885450expressed protein
LOC_Os07g38170Os.10322.1.S1_s_at11/117+22887624..22889245Remorin, C-terminal region family protein, expressed
LOC_Os07g38190OsAffx.28338.3.A1_x_at2/117+22907962..22908702hypothetical protein
LOC_Os07g38190OsAffx.5300.2.S1_at1/117+22907962..22908702hypothetical protein
LOC_Os07g38190OsAffx.17065.1.A1_s_at1/117+22907962..22908702hypothetical protein
LOC_Os07g38200NANA7+22912839..22913147hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10322.1.S1_s_at--1078--3631Chr07:22887926..22887950 (25 bp)
CTTCGCTTCACACGCAGGGATCAGT
LOC_Os07g38170
Os.10322.1.S1_s_at--368--411Chr07:22887907..22887931 (25 bp)
ATCAGTGCTGTGATGTGGTTGCTGT
LOC_Os07g38170
Os.10322.1.S1_s_at--711--791Chr07:22887895..22887919 (25 bp)
ATGTGGTTGCTGTGTGGAACTCTCG
LOC_Os07g38170
Os.10322.1.S1_s_at--730--8171Chr07:22887880..22887904 (25 bp)
GGAACTCTCGTTTTAGTGTTGTATC
LOC_Os07g38170
Os.10322.1.S1_s_at--646--1111Chr07:22887866..22887890 (25 bp)
AGTGTTGTATCCACATGTATGATGT
LOC_Os07g38170
Os.10322.1.S1_s_at--325--711Chr07:22887848..22887872 (25 bp)
ATGATGTACTGTCATCATATCCTCT
LOC_Os07g38170
Os.10322.1.S1_s_at--409--9591Chr07:22887807..22887831 (25 bp)
TCTTGTTCTCTTTACTTTCTTGTGC
LOC_Os07g38170
Os.10322.1.S1_s_at--270--2051Chr07:22887794..22887818 (25 bp)
ACTTTCTTGTGCTTGATAAGGGTAT
LOC_Os07g38170
Os.10322.1.S1_s_at--809--351Chr07:22887731..22887755 (25 bp)
ATAAGTTGGATGGTGCTCTGCCCCT
LOC_Os07g38170
Os.10322.1.S1_s_at--621--9491Chr07:22887715..22887739 (25 bp)
TCTGCCCCTTATAGCTTATGGTGAG
LOC_Os07g38170
Os.10322.1.S1_s_at--677--5611Chr07:22887687..22887711 (25 bp)
GACAAGAGCTGCCTGTAATTTGTTT
LOC_Os07g38170
Target Sequence 
CTTCGCTTCACACGCAGGGATCAGTGCTGTGATGTGGTTGCTGTGTGGAACTCTCGTTTTAGTGTTGTATCCACATGTAT
GATGTACTGTCATCATATCCTCTNTTTTTTTTCTTTTTTTCTTGTTCTCTTTACTTTCTTGTGCTTGATAAGGGTATTGC
AAAGTTGGGAGGGACAGACAGAACANAGTAAATAGCATAAGTTGGATGGTGCTCTGCCCCTTATAGCTTATGGTGAGGGG
GACAAGAGCTGCCTGTAATTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10322.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis