Browse Element(s) Details


Os.48079.1.S1_at

Description gb:AK062660.1
DB_XREF= gi:32972678
TID=Os.48079.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F04, full insert sequence.
FL= gb:AK062660.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3815011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38120Os.12666.1.S1_at11/117+22856901..22860879Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g38130Os.10733.1.S1_at11/117+22872563..22874011Polygalacturonase inhibitor 1 precursor, putative, expressed
LOC_Os07g38140Os.28645.1.S1_at10/117+22876832..22877600expressed protein
LOC_Os07g38150Os.48079.1.S1_at11/117+22878723..22880371expressed protein
LOC_Os07g38160Os.17059.1.S1_at11/117+22880556..22885450expressed protein
LOC_Os07g38170Os.10322.1.S1_s_at11/117+22887624..22889245Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48079.1.S1_at--563--5811Chr07:22879101..22879125 (25 bp)
GACCCTTACATGGACCGAGATATGA
LOC_Os07g38150
Os.48079.1.S1_at--857--5471Chr07:22879053..22879077 (25 bp)
GAACTTCCTGAATTTTCTCCAACGT
LOC_Os07g38150
Os.48079.1.S1_at--666--7051Chr07:22879026..22879050 (25 bp)
GTAACATTCTCAACACTTGCACTTG
LOC_Os07g38150
Os.48079.1.S1_at--380--2071Chr07:22879012..22879036 (25 bp)
ACTTGCACTTGTTATCCTCACGATA
LOC_Os07g38150
Os.48079.1.S1_at--389--571Chr07:22878999..22879023 (25 bp)
ATCCTCACGATATTCACCAACGTTG
LOC_Os07g38150
Os.48079.1.S1_at--1089--1691Chr07:22878984..22879008 (25 bp)
ACCAACGTTGTGTTCAATCTTTACA
LOC_Os07g38150
Os.48079.1.S1_at--268--3071Chr07:22878969..22878993 (25 bp)
AATCTTTACATCAAACCTTCCGTGG
LOC_Os07g38150
Os.48079.1.S1_at--123--1951Chr07:22878944..22878968 (25 bp)
ACGGCGTCGATCAGCCTGTAAGAAT
LOC_Os07g38150
Os.48079.1.S1_at--770--1051Chr07:22878915..22878939 (25 bp)
AGGGTGCCTATGGTTAATCCAGCAG
LOC_Os07g38150
Os.48079.1.S1_at--439--3031Chr07:22878900..22878924 (25 bp)
AATCCAGCAGACCAGCAATTCAAGT
LOC_Os07g38150
Os.48079.1.S1_at--373--9591Chr07:22878745..22878769 (25 bp)
TCATTTTGTTGGCTCTGGGAATTCA
LOC_Os07g38150
Target Sequence 
GACCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGAATTTTCTCCAACGTATGTAAC
ATTCTCAACACTTGCACTTGTTATCCTCACGATATTCACCAACGTTGTGTTCAATCTTTACATCAAACCTTCCGTGGACG
GCGTCGATCAGCCTGTAAGAATTGANAGGGTGCCTATGGTTAATCCAGCAGACCAGCAATTCAAGTAGCTTCTAGACTAG
GCATATAAATTTGTTATAGCAAGAAGTGATATNATATGCTAGTAAAATAGATCATGATTCATGTGTATTCAACCATATCT
TCTTTTTGTATTTANCACCCATACGTTCTAAATGAATCATTTTGTTGGCTCTGGGAATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis