Browse Element(s) Details


Os.12666.1.S1_at

Description gb:AK068315.1
DB_XREF= gi:32978333
TID=Os.12666.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative calcium-dependent protein kinase (OJ1092_A07.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149I06, full insert sequence.
FL= gb:AK068315.1 gb:AK073000.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3812011/11Calcium-dependent protein kinase, isoform AK1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38080Os.35731.1.S1_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.3.S1_x_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.2.S1_x_at4/117+22830169..22835541expressed protein
LOC_Os07g38090Os.14948.1.S1_at11/117+22839292..22842243Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os07g38100OsAffx.20985.1.S1_at11/117+22843358..22848027TB2/DP1, HVA22 family protein, expressed
LOC_Os07g38110Os.9633.1.S1_a_at11/117+22849663..22852221Tic20, putative, expressed
LOC_Os07g38120Os.12666.1.S1_at11/117+22856901..22860879Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g38130Os.10733.1.S1_at11/117+22872563..22874011Polygalacturonase inhibitor 1 precursor, putative, expressed
LOC_Os07g38140Os.28645.1.S1_at10/117+22876832..22877600expressed protein
LOC_Os07g38150Os.48079.1.S1_at11/117+22878723..22880371expressed protein
LOC_Os07g38160Os.17059.1.S1_at11/117+22880556..22885450expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12666.1.S1_at--62--2791Chr07:22857352..22857376 (25 bp)
AAGAGAACGGTTCACTAGCCTCAGC
LOC_Os07g38120
Os.12666.1.S1_at--601--2031Chr07:22857339..22857363 (25 bp)
ACTAGCCTCAGCCTAAAACTTCAGA
LOC_Os07g38120
Os.12666.1.S1_at--849--10071Chr07:22857266..22857290 (25 bp)
TAGGCAAGTTGTGAATTCCCCAGAT
LOC_Os07g38120
Os.12666.1.S1_at--35--5531Chr07:22857241..22857265 (25 bp)
GAAAACCTTGTGTAGCTTTCCTGGT
LOC_Os07g38120
Os.12666.1.S1_at--1081--8931Chr07:22857209..22857233 (25 bp)
TGACGACTATTTTCTTCCGTTCTCA
LOC_Os07g38120
Os.12666.1.S1_at--870--191Chr07:22857185..22857209 (25 bp)
ATTTCTCGAGATTTCCACTGCTCTA
LOC_Os07g38120
Os.12666.1.S1_at--400--10251Chr07:22857152..22857176 (25 bp)
TTTGGTGCCCCGTATGAAGCATTAG
LOC_Os07g38120
Os.12666.1.S1_at--42--1271Chr07:22857091..22857115 (25 bp)
AGATTATATTGATCCATGCCCCACG
LOC_Os07g38120
Os.12666.1.S1_at--27--10411Chr07:22857007..22857031 (25 bp)
TTTTGTGCATTCCTAACCTTGTTCT
LOC_Os07g38120
Os.12666.1.S1_at--36--1991Chr07:22856974..22856998 (25 bp)
ACTCCTTTTTCCTAAGAATGCTTGG
LOC_Os07g38120
Os.12666.1.S1_at--388--5991Chr07:22856925..22856949 (25 bp)
GAGACTGAACTTACAACACACGCAA
LOC_Os07g38120
Target Sequence 
AAGAGAACGGTTCACTAGCCTCAGCCTAAAACTTCAGAAAGATGGATCATTGCAGTTAACAACTACCCAATAGATAGATG
ACGGAATAGGCAAGTTGTGAATTCCCCAGATGAAAACCTTGTGTAGCTTTCCTGGTTCTTTGTTGACGACTATTTTCTTC
CGTTCTCATTTCTCGAGATTTCCACTGCTCTATTTTTCATTTTGGTGCCCCGTATGAAGCATTAGGTGATTGTTGGAAGG
TTTGTTTGTTTGTTTGTATTTAGATTATATTGATCCATGCCCCACGGGTGGCCAAACATTTGGCGAAATGTACTGTNCAA
GAGAAAGGAAAAGGAAGTAGGTGGTTTTTGTGCATTCCTAACCTTGTTCTGTTTTATTACTCCTTTTTCCTAAGAATGCT
TGGTTTATACTCTGAAACTGAAAGTCAGAGACTGAACTTACAACACACGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis