Browse Element(s) Details


Os.35731.3.S1_x_at

Description gb:NM_186371.1
DB_XREF= gi:34899827
GEN=OJ1092_A07.23
TID=Os.35731.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1092_A07.23 (OJ1092_A07.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1092_A07.23 (OJ1092_A07.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3808011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38030Os.37032.1.S1_a_at11/117+22806023..22807670GRAS family transcription factor containing protein, expressed
LOC_Os07g38040OsAffx.28808.1.S1_at11/117+22810054..22810287expressed protein
LOC_Os07g38050OsAffx.22479.1.S1_x_at11/117+22814061..22815137hypothetical protein
LOC_Os07g38060Os.33891.1.S1_at11/117+22815501..22820481expressed protein
LOC_Os07g38070Os.27184.1.S1_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38070Os.44458.1.A1_x_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38080Os.35731.1.S1_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.3.S1_x_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.2.S1_x_at4/117+22830169..22835541expressed protein
LOC_Os07g38090Os.14948.1.S1_at11/117+22839292..22842243Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os07g38100OsAffx.20985.1.S1_at11/117+22843358..22848027TB2/DP1, HVA22 family protein, expressed
LOC_Os07g38110Os.9633.1.S1_a_at11/117+22849663..22852221Tic20, putative, expressed
LOC_Os07g38120Os.12666.1.S1_at11/117+22856901..22860879Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35731.3.S1_x_at--57--2471Chr07:22831203..22831227 (25 bp)
AACAACCCGAGCTCTGGAAGCTCTT
LOC_Os07g38080
Os.35731.3.S1_x_at--481--8191Chr07:22831188..22831212 (25 bp)
GGAAGCTCTTGCTTGTGGCTTTATT
LOC_Os07g38080
Os.35731.3.S1_x_at--996--8151Chr07:22831139..22831163 (25 bp)
GGAAACTTCCCATCTTCAAGCAGGA
LOC_Os07g38080
Os.35731.3.S1_x_at--155--3931Chr07:22831100..22831124 (25 bp)
CGGCGACCACGGAGATTAACTGATG
LOC_Os07g38080
Os.35731.3.S1_x_at--1011--8871Chr07:22831080..22831104 (25 bp)
TGATGGTGCAGTGTCATTTCCTTCT
LOC_Os07g38080
Os.35731.3.S1_x_at--220--3471Chr07:22831072..22831096 (25 bp)
CAGTGTCATTTCCTTCTGATGGTGA
LOC_Os07g38080
Os.35731.3.S1_x_at--298--1231Chr07:22831040..22831064 (25 bp)
AGTTCTCATTTTACCGATTCAGCCA
LOC_Os07g38080
Os.35731.3.S1_x_at--256--9971Chr07:22831029..22831053 (25 bp)
TACCGATTCAGCCATTATTGTCAAT
LOC_Os07g38080
Os.35731.3.S1_x_at--8--671Chr07:22831006..22831030 (25 bp)
ATGAATGGCACATGACTAACCGTCA
LOC_Os07g38080
Os.35731.3.S1_x_at--338--3711Chr07:22830991..22831015 (25 bp)
CTAACCGTCAGTATCAAGTCCTTGA
LOC_Os07g38080
Os.35731.3.S1_x_at--779--471Chr07:22830822..22830846 (25 bp)
ATCTGCTGATAAAGGGACTCGTGAA
LOC_Os07g38080
Target Sequence 
AACAACCCGAGCTCTGGAAGCTCTTGCTTGTGGCTTTATTGGGACAAAGCAGAAGGGCGCGGAAGGAAACTTCCCATCTT
CAAGCAGGAGCAGCAGACCTGTCCGGCGACCACGGAGATTAACTGATGGTGCAGTGTCATTTCCTTCTGATGGTGAGGGA
AGTAGTTCTCATTTTACCGATTCAGCCATTATTGTCAATGAATGGCACATGACTAACCGTCAGTATCAAGTCCTTGACAA
CACCCCCACAGATAAGTCCACTGATAACAGGACTCGTGAATTGTTTGGGGCAGACAAATCTGCTGATAAAGGGACTCGTG
AATTTTTTGGGGCAGACAAATCTGCTGATAAAGGGACTCGTGAATTTTTTGGGGCAGACAAATCTGCTGATAAAGGGACT
CGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35731.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis