Browse Element(s) Details


OsAffx.28808.1.S1_at

Description tigr:9635.m03782
TID=OsAffx.28808.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3804011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37970OsAffx.16605.1.S1_at11/117+22783473..22785671Cytochrome P450 51, putative
LOC_Os07g37980OsAffx.28806.1.S1_at11/117+22787237..22789492Cytochrome P450 51, putative
LOC_Os07g37990Os.10954.1.S1_at11/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g37990Os.18186.1.S1_at1/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g38000Os.37602.2.S1_x_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38000Os.37602.1.S1_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38010NANA7+22800855..22801187hypothetical protein
LOC_Os07g38020OsAffx.16606.1.A1_at3/117+22803962..22804693hypothetical protein
LOC_Os07g38030Os.37032.1.S1_a_at11/117+22806023..22807670GRAS family transcription factor containing protein, expressed
LOC_Os07g38040OsAffx.28808.1.S1_at11/117+22810054..22810287expressed protein
LOC_Os07g38050OsAffx.22479.1.S1_x_at11/117+22814061..22815137hypothetical protein
LOC_Os07g38060Os.33891.1.S1_at11/117+22815501..22820481expressed protein
LOC_Os07g38070Os.27184.1.S1_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38070Os.44458.1.A1_x_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38080Os.35731.1.S1_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.3.S1_x_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.2.S1_x_at4/117+22830169..22835541expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28808.1.S1_at--1132--8412Chr12:24580069..24580093 (25 bp)
TGGCCAATACGGTAGGAGTTCCCAA
NONE
OsAffx.28808.1.S1_at--649--6031Chr07:22810116..22810140 (25 bp)
GAGTTCCCAAAAAAGAATGGCGCAC
LOC_Os07g38040
OsAffx.28808.1.S1_at--725--2432Chr07:22810126..22810150 (25 bp)
AAAAGAATGGCGCACTCTCATCCTC
LOC_Os07g38040
OsAffx.28808.1.S1_at--336--9611Chr07:22810143..22810167 (25 bp)
TCATCCTCCTTGTGGTGCGGGAGAT
LOC_Os07g38040
OsAffx.28808.1.S1_at--953--5231Chr07:22810180..22810204 (25 bp)
GAATCAGCAGATTTTCTAGCACAAG
LOC_Os07g38040
OsAffx.28808.1.S1_at--1048--3351Chr07:22810187..22810211 (25 bp)
CAGATTTTCTAGCACAAGGAGTCCA
LOC_Os07g38040
OsAffx.28808.1.S1_at--474--3291Chr07:22810199..22810223 (25 bp)
CACAAGGAGTCCACAGCGACGTATT
LOC_Os07g38040
OsAffx.28808.1.S1_at--455--6111Chr07:22810205..22810229 (25 bp)
GAGTCCACAGCGACGTATTTGCTTG
LOC_Os07g38040
OsAffx.28808.1.S1_at--1093--2151Chr07:22810211..22810235 (25 bp)
ACAGCGACGTATTTGCTTGCCAAAA
LOC_Os07g38040
OsAffx.28808.1.S1_at--28--4611Chr07:22810214..22810238 (25 bp)
GCGACGTATTTGCTTGCCAAAATCA
LOC_Os07g38040
OsAffx.28808.1.S1_at--986--6871Chr07:22810219..22810243 (25 bp)
GTATTTGCTTGCCAAAATCAAAGAA
LOC_Os07g38040
Target Sequence 
TGGCCAATACGGTAGGAGTTCCCAAAAAAGAATGGCGCACTCTCATCCTCCTTGTGGTGCGGGAGATCTGGAAGGAGCAG
AATCAGCAGATTTTCTAGCACAAGGAGTCCACAGCGACGTATTTGCTTGCCAAAATCAAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis