Browse Element(s) Details


OsAffx.22479.1.S1_x_at

Description tigr:9635.m03783
TID=OsAffx.22479.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3805011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37980OsAffx.28806.1.S1_at11/117+22787237..22789492Cytochrome P450 51, putative
LOC_Os07g37990Os.10954.1.S1_at11/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g37990Os.18186.1.S1_at1/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g38000Os.37602.2.S1_x_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38000Os.37602.1.S1_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38010NANA7+22800855..22801187hypothetical protein
LOC_Os07g38020OsAffx.16606.1.A1_at3/117+22803962..22804693hypothetical protein
LOC_Os07g38030Os.37032.1.S1_a_at11/117+22806023..22807670GRAS family transcription factor containing protein, expressed
LOC_Os07g38040OsAffx.28808.1.S1_at11/117+22810054..22810287expressed protein
LOC_Os07g38050OsAffx.22479.1.S1_x_at11/117+22814061..22815137hypothetical protein
LOC_Os07g38060Os.33891.1.S1_at11/117+22815501..22820481expressed protein
LOC_Os07g38070Os.27184.1.S1_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38070Os.44458.1.A1_x_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38080Os.35731.1.S1_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.3.S1_x_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.2.S1_x_at4/117+22830169..22835541expressed protein
LOC_Os07g38090Os.14948.1.S1_at11/117+22839292..22842243Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22479.1.S1_x_at--647--7811Chr07:22814142..22814166 (25 bp)
GGATACCCGGGCAACTTCGACGTGG
LOC_Os07g38050
OsAffx.22479.1.S1_x_at--521--5691Chr07:22814143..22814167 (25 bp)
GATACCCGGGCAACTTCGACGTGGG
LOC_Os07g38050
OsAffx.22479.1.S1_x_at--591--9951Chr07:22814145..22814169 (25 bp)
TACCCGGGCAACTTCGACGTGGGCA
LOC_Os07g38050
OsAffx.22479.1.S1_x_at--1096--1791Chr07:22814146..22814170 (25 bp)
ACCCGGGCAACTTCGACGTGGGCAT
LOC_Os07g38050
OsAffx.22479.1.S1_x_at--139--3991Chr07:22814149..22814173 (25 bp)
CGGGCAACTTCGACGTGGGCATGAA
LOC_Os07g38050
OsAffx.22479.1.S1_x_at--538--5151Chr07:22814152..22814176 (25 bp)
GCAACTTCGACGTGGGCATGAACCC
LOC_Os07g38050
OsAffx.22479.1.S1_x_at--1153--9351Chr07:22814158..22814182 (25 bp)
TCGACGTGGGCATGAACCCGCCGCA
LOC_Os07g38050
OsAffx.22479.1.S1_x_at--1017--5751Chr07:22814160..22814184 (25 bp)
GACGTGGGCATGAACCCGCCGCAGC
LOC_Os07g38050
OsAffx.22479.1.S1_x_at--306--4131Chr07:22814188..22814212 (25 bp)
CGCAGACACAGAGCCGCGGTGACAA
LOC_Os07g38050
OsAffx.22479.1.S1_x_at--1002--4211Chr07:22814201..22814225 (25 bp)
CCGCGGTGACAAGGCCTTCCTGGAA
LOC_Os07g38050
OsAffx.22479.1.S1_x_at--888--7731Chr07:22814205..22814229 (25 bp)
GGTGACAAGGCCTTCCTGGAAGGAT
LOC_Os07g38050
Target Sequence 
GGATACCCGGGCAACTTCGACGTGGGCATGAACCCGCCGCAGCCCGCGCAGACACAGAGCCGCGGTGACAAGGCCTTCCT
GGAAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22479.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis