Browse Element(s) Details


Os.44458.1.A1_x_at

Description gb:BX900231
DB_XREF= gi:40492357
DB_XREF=BX900231
CLONE=y628d05p5
TID=Os.44458.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.44458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine-specific receptor protein kinase (OJ1092_A07.22), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3807011/11Nodulation receptor kinase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38010NANA7+22800855..22801187hypothetical protein
LOC_Os07g38020OsAffx.16606.1.A1_at3/117+22803962..22804693hypothetical protein
LOC_Os07g38030Os.37032.1.S1_a_at11/117+22806023..22807670GRAS family transcription factor containing protein, expressed
LOC_Os07g38040OsAffx.28808.1.S1_at11/117+22810054..22810287expressed protein
LOC_Os07g38050OsAffx.22479.1.S1_x_at11/117+22814061..22815137hypothetical protein
LOC_Os07g38060Os.33891.1.S1_at11/117+22815501..22820481expressed protein
LOC_Os07g38070Os.27184.1.S1_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38070Os.44458.1.A1_x_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38080Os.35731.1.S1_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.3.S1_x_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.2.S1_x_at4/117+22830169..22835541expressed protein
LOC_Os07g38090Os.14948.1.S1_at11/117+22839292..22842243Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os07g38100OsAffx.20985.1.S1_at11/117+22843358..22848027TB2/DP1, HVA22 family protein, expressed
LOC_Os07g38110Os.9633.1.S1_a_at11/117+22849663..22852221Tic20, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44458.1.A1_x_at--68--2111Chr07:22829178..22829202 (25 bp)
ACATGAGGTCCATCGAAAGCACGGG
LOC_Os07g38070
Os.44458.1.A1_x_at--751--2611Chr07:22829216..22829240 (25 bp)
AACCGCTACCTGTCCATTGATAGGA
LOC_Os07g38070
Os.44458.1.A1_x_at--310--4811Chr07:22829261..22829285 (25 bp)
GCTCGATTCGCATCATTTGACGCTA
LOC_Os07g38070
Os.44458.1.A1_x_at--791--10251Chr07:22829276..22829300 (25 bp)
TTTGACGCTACGAAAGGGCATTTGC
LOC_Os07g38070
Os.44458.1.A1_x_at--682--4951Chr07:22829293..22829317 (25 bp)
GCATTTGCAAACGATGCCTTCGCTT
LOC_Os07g38070
Os.44458.1.A1_x_at--872--851Chr07:22829339..22829363 (25 bp)
ATGGCTATTGTTTTTATGACCTCAG
LOC_Os07g38070
Os.44458.1.A1_x_at--779--6031Chr07:22829421..22829445 (25 bp)
GAGATGCTCCGTAAACTATACCCAT
LOC_Os07g38070
Os.44458.1.A1_x_at--377--3431Chr07:22829505..22829529 (25 bp)
CAGAGCAGTTTTGCCTTTGCAGTTT
LOC_Os07g38070
Os.44458.1.A1_x_at--780--5571Chr07:22829549..22829573 (25 bp)
GAAAGTGCCCTCATATACTACTCTT
LOC_Os07g38070
Os.44458.1.A1_x_at--633--9891Chr07:22829564..22829588 (25 bp)
TACTACTCTTTGGTTTCGGTCTTAG
LOC_Os07g38070
Os.44458.1.A1_x_at--678--10611Chr07:22829578..22829602 (25 bp)
TTCGGTCTTAGATCACTTCATTGTT
LOC_Os07g38070
Target Sequence 
ACATGAGGTCCATCGAAAGCACGGGGACACTTGGCTCCAACCGCTACCTGTCCATTGATAGGAAGATGTTTGCTTCGGGT
TCAGCTCGATTCGCATCATTTGACGCTACGAAAGGGCATTTGCAAACGATGCCTTCGCTTCCGGGGTAGTTTGGCTGTGC
AATGGCTATTGTTTTTATGACCTCAGGGGGATGTCATGCTTGTGTTGAAGGCATCAAGCAACGATTGGCAAGATAAGGAT
ATGGAGATGCTCCGTAAACTATACCCATCTGTACAGATATCAGAATTCAGAGATCATGCAGTGATGATATGGGAAAAGCT
TCACAAACAGAGCAGTTTTGCCTTTGCAGTTTGTACTGATTCAATGNTTCTGAAAGTGCCCTCATATACTACTCTTTGGT
TTCGGTCTTAGATCACTTCATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44458.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis