Browse Element(s) Details


OsAffx.20985.1.S1_at

Description tigr:9635.m03789
TID=OsAffx.20985.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TB2DP1, HVA22 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3810011/11TB2/DP1, HVA22 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38060Os.33891.1.S1_at11/117+22815501..22820481expressed protein
LOC_Os07g38070Os.27184.1.S1_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38070Os.44458.1.A1_x_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38080Os.35731.1.S1_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.3.S1_x_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.2.S1_x_at4/117+22830169..22835541expressed protein
LOC_Os07g38090Os.14948.1.S1_at11/117+22839292..22842243Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os07g38100OsAffx.20985.1.S1_at11/117+22843358..22848027TB2/DP1, HVA22 family protein, expressed
LOC_Os07g38110Os.9633.1.S1_a_at11/117+22849663..22852221Tic20, putative, expressed
LOC_Os07g38120Os.12666.1.S1_at11/117+22856901..22860879Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g38130Os.10733.1.S1_at11/117+22872563..22874011Polygalacturonase inhibitor 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20985.1.S1_at--109--8331Chr07:22845152..22845175 (24 bp)
GGCTCCAGTTTCCTTCAAACAGTGG
LOC_Os07g38100
OsAffx.20985.1.S1_at--421--6871Chr07:22844390..22844414 (25 bp)
GTATATGCGGCCGTTTTTCCTGAAA
LOC_Os07g38100
OsAffx.20985.1.S1_at--1024--9811Chr07:22844230..22844252 (23 bp)
TAAACAAGTTCGTGAGCAGCCATGA
LOC_Os07g38100
OsAffx.20985.1.S1_at--553--191Chr07:22844194..22844218 (25 bp)
ATTTCATAGAGCACATGGCCGCCAG
LOC_Os07g38100
OsAffx.20985.1.S1_at--564--7111Chr07:22843686..22843710 (25 bp)
GTCAGAGCAGCGATCGAAGGGCCAA
LOC_Os07g38100
OsAffx.20985.1.S1_at--451--5311Chr07:22843671..22843695 (25 bp)
GAAGGGCCAAATTCAACCACAACGG
LOC_Os07g38100
OsAffx.20985.1.S1_at--893--3511Chr07:22843619..22843643 (25 bp)
CATGAGCTTGACTTCATCAGTTTCT
LOC_Os07g38100
OsAffx.20985.1.S1_at--1132--3571Chr07:22843564..22843588 (25 bp)
CATTTGTGTCGATGTGCTACAGTAA
LOC_Os07g38100
OsAffx.20985.1.S1_at--1048--10311Chr07:22843483..22843507 (25 bp)
TTTCATGGGATTTCCAGCTTGTTAG
LOC_Os07g38100
OsAffx.20985.1.S1_at--316--2131Chr07:22843437..22843461 (25 bp)
ACAGGTTCTGTGTCGCTTAAGCTAG
LOC_Os07g38100
OsAffx.20985.1.S1_at--524--2351Chr07:22843400..22843424 (25 bp)
AAACCACTTATTCTGTTGGCATGAG
LOC_Os07g38100
Target Sequence 
GGCTCCAGTTTCCTTCAAACAGTGGAGCAAAGCATGTATATAGAAGGTATATGCGGCCGTTTTTCCTGAAACATCAAGCA
AAAATCGATAGAATCCTAAATATTCTATCGAAGGAACTAAACAAGTTCGTGAGCAGCCATGAAGATGAGATCCATTTCAT
AGAGCACATGGCCGCCAGGGGTGCTTCAACANNNAATTATATAATAAACGGTCCTGAACAATCAGAAGCGGTCAGAGCAG
CGATCGAAGGGCCAAATTCAACCACAACGGAAGAGGCTGGCACCCCCAGAAATGAAACATGAGCTTGACTTCATCAGTTT
CTTAAGTGTGTTTGGCAAGGGCACAGCAAATACATTTGTGTCGATGTGCTACAGTAATGTTTATTTAGATTATCTTTCCA
GCTTATTTATTTAGGGGTTTCCAGCTTTGTATTTTTCATGGGATTTCCAGCTTGTTAGTGGAATGTGAATATGAGCATGA
CAGGTTCTGTGTCGCTTAAGCTAGATCGACACTATCAAACCACTTATTCTGTTGGCATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis