Browse Element(s) Details


Os.10733.1.S1_at

Description gb:AF466357.1
DB_XREF= gi:27497119
GEN=FOR1
TID=Os.10733.1
CNT=64
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10733 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) floral organ regulator 1 (FOR1) mRNA, complete cds.
PROD=floral organ regulator 1
FL= gb:AF466357.1 gb:AK101897.1 gb:AK061685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3813011/11Polygalacturonase inhibitor 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38100OsAffx.20985.1.S1_at11/117+22843358..22848027TB2/DP1, HVA22 family protein, expressed
LOC_Os07g38110Os.9633.1.S1_a_at11/117+22849663..22852221Tic20, putative, expressed
LOC_Os07g38120Os.12666.1.S1_at11/117+22856901..22860879Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g38130Os.10733.1.S1_at11/117+22872563..22874011Polygalacturonase inhibitor 1 precursor, putative, expressed
LOC_Os07g38140Os.28645.1.S1_at10/117+22876832..22877600expressed protein
LOC_Os07g38150Os.48079.1.S1_at11/117+22878723..22880371expressed protein
LOC_Os07g38160Os.17059.1.S1_at11/117+22880556..22885450expressed protein
LOC_Os07g38170Os.10322.1.S1_s_at11/117+22887624..22889245Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0009411biological_processresponse to UV
GO:0009650biological_processUV protection
GO:0042221biological_processresponse to chemical stimulus
GO:0042493biological_processresponse to drug
GO:0009507cellular_componentchloroplast
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10733.1.S1_at--664--5151Chr07:22872994..22873018 (25 bp)
GCAAGCCGTACGAGCACAACCAGTG
LOC_Os07g38130
Os.10733.1.S1_at--222--7791Chr07:22872946..22872970 (25 bp)
GGTGCCACCAATCGTGAGCATCCAT
LOC_Os07g38130
Os.10733.1.S1_at--324--4611Chr07:22872905..22872929 (25 bp)
GCGAGCTGATGCTGCCACGTAAGGT
LOC_Os07g38130
Os.10733.1.S1_at--183--631Chr07:22872897..22872921 (25 bp)
ATGCTGCCACGTAAGGTGGAGCCCG
LOC_Os07g38130
Os.10733.1.S1_at--849--10171Chr07:22872859..22872883 (25 bp)
TATACGTGTTTGGTGTTTTTTCGCG
LOC_Os07g38130
Os.10733.1.S1_at--469--5751Chr07:22872828..22872852 (25 bp)
GACGTGGCCGTGTAGTACACGGTAC
LOC_Os07g38130
Os.10733.1.S1_at--402--1171Chr07:22872815..22872839 (25 bp)
AGTACACGGTACGACGGGTGCAGCC
LOC_Os07g38130
Os.10733.1.S1_at--340--2651Chr07:22872751..22872775 (25 bp)
AACCAAGGTAGAGTGCCTGCACGCG
LOC_Os07g38130
Os.10733.1.S1_at--793--3991Chr07:22872724..22872748 (25 bp)
CGTGGTCGACTCTCCTTCAGATTGT
LOC_Os07g38130
Os.10733.1.S1_at--14--9931Chr07:22872700..22872724 (25 bp)
TACGAAACGAGGGAGCCGTGTGTAC
LOC_Os07g38130
Os.10733.1.S1_at--1162--8671Chr07:22872674..22872698 (25 bp)
TGTGCGTACGTGTACCGTGTATGGA
LOC_Os07g38130
Target Sequence 
GCAAGCCGTACGAGCACAACCAGTGCGCCGGCGGCGCCCCGCTCGGCGGGTGCCACCAATCGTGAGCATCCATCCATCCA
TCACCGCCGGCGAGCTGATGCTGCCACGTAAGGTGGAGCCCGGGGTGCGTAACGGTATACGTGTTTGGTGTTTTTTCGCG
TACGGGGACGTGGCCGTGTAGTACACGGTACGACGGGTGCAGCCGTGCAGGGTACTGGGCGGGTTTACGTTAGTACAAAT
TGTAACCAAGGTAGAGTGCCTGCACGCGTGCGTGGTCGACTCTCCTTCAGATTGTACGAAACGAGGGAGCCGTGTGTACG
TGTGCGTACGTGTACCGTGTATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis