Browse Element(s) Details


Os.28645.1.S1_at

Description gb:AK111260.1
DB_XREF= gi:32996469
TID=Os.28645.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28645 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-E12, full insert sequence.
FL= gb:AK111260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3814010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38110Os.9633.1.S1_a_at11/117+22849663..22852221Tic20, putative, expressed
LOC_Os07g38120Os.12666.1.S1_at11/117+22856901..22860879Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os07g38130Os.10733.1.S1_at11/117+22872563..22874011Polygalacturonase inhibitor 1 precursor, putative, expressed
LOC_Os07g38140Os.28645.1.S1_at10/117+22876832..22877600expressed protein
LOC_Os07g38150Os.48079.1.S1_at11/117+22878723..22880371expressed protein
LOC_Os07g38160Os.17059.1.S1_at11/117+22880556..22885450expressed protein
LOC_Os07g38170Os.10322.1.S1_s_at11/117+22887624..22889245Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28645.1.S1_at--447--3251NONE
CAACCTGCCGGTGCGTGTGGCTTGC
NONE
Os.28645.1.S1_at--549--7291Chr07:22877224..22877248 (25 bp)
GTGCGGCTCGTCAAAACCGCGCGTG
LOC_Os07g38140
Os.28645.1.S1_at--971--811Chr07:22877139..22877163 (25 bp)
ATGGTGCATGCAGTTCTTCGATCGT
LOC_Os07g38140
Os.28645.1.S1_at--468--5031Chr07:22877130..22877154 (25 bp)
GCAGTTCTTCGATCGTGACACGGTG
LOC_Os07g38140
Os.28645.1.S1_at--1101--3331Chr07:22877030..22877054 (25 bp)
CACGGCTTGGCTGTCATCTGGTTAT
LOC_Os07g38140
Os.28645.1.S1_at--878--9591Chr07:22877017..22877041 (25 bp)
TCATCTGGTTATTCTGGCCGGGTAG
LOC_Os07g38140
Os.28645.1.S1_at--666--3411Chr07:22876970..22876994 (25 bp)
CAGAGGGCTACGAACGTTAGCGATT
LOC_Os07g38140
Os.28645.1.S1_at--458--4631Chr07:22876951..22876975 (25 bp)
GCGATTGAACTTATCCATGCGTGAG
LOC_Os07g38140
Os.28645.1.S1_at--986--6011Chr07:22876925..22876949 (25 bp)
GAGAGTATTCACTGTTGTTGCCTGT
LOC_Os07g38140
Os.28645.1.S1_at--257--9191Chr07:22876907..22876931 (25 bp)
TGCCTGTGGAGCGTGGAGTACTATA
LOC_Os07g38140
Os.28645.1.S1_at--921--1993Chr11:20239481..20239500 (20 bp)
ACTCCCTCTGTCCTCTAATACAAGA
NONE
Target Sequence 
CAACCTGCCGGTGCGTGTGGCTTGCGTGCGGCTCGTCAAAACCGCGCGTGGGGGATATGCATGGGCCGCGGCCGGTTGCG
GTGCCGCCGCGCCGTCGCGGTCGCGGATGCATGGTGCATGCAGTTCTTCGATCGTGACACGGTGGGAGGGTGGGAGCAGC
TCGGATCTGGGGAGGTAATGATCGCACGGGGGCAACTGGGCAAAGGACGGATCGCCCTCCACGGCTTGGCTGTCATCTGG
TTATTCTGGCCGGGTAGGGCAGCTAGGGACGGGAGGGGGCAGAGGGCTACGAACGTTAGCGATTGAACTTATCCATGCGT
GAGGGAGAGTATTCACTGTTGTTGCCTGTGGAGCGTGGAGTACTATAACTACTACTCCCTCTGTCCTCTAATACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis