Browse Element(s) Details


Os.27184.1.S1_at

Description gb:AK099778.1
DB_XREF= gi:32984987
TID=Os.27184.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095J08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095J08, full insert sequence.
FL= gb:AK099778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3807011/11Nodulation receptor kinase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38010NANA7+22800855..22801187hypothetical protein
LOC_Os07g38020OsAffx.16606.1.A1_at3/117+22803962..22804693hypothetical protein
LOC_Os07g38030Os.37032.1.S1_a_at11/117+22806023..22807670GRAS family transcription factor containing protein, expressed
LOC_Os07g38040OsAffx.28808.1.S1_at11/117+22810054..22810287expressed protein
LOC_Os07g38050OsAffx.22479.1.S1_x_at11/117+22814061..22815137hypothetical protein
LOC_Os07g38060Os.33891.1.S1_at11/117+22815501..22820481expressed protein
LOC_Os07g38070Os.27184.1.S1_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38070Os.44458.1.A1_x_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38080Os.35731.1.S1_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.3.S1_x_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.2.S1_x_at4/117+22830169..22835541expressed protein
LOC_Os07g38090Os.14948.1.S1_at11/117+22839292..22842243Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os07g38100OsAffx.20985.1.S1_at11/117+22843358..22848027TB2/DP1, HVA22 family protein, expressed
LOC_Os07g38110Os.9633.1.S1_a_at11/117+22849663..22852221Tic20, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27184.1.S1_at--684--10491Chr07:22829650..22829674 (25 bp)
TTAATGCTACTATATTGCCTTTTGC
LOC_Os07g38070
Os.27184.1.S1_at--445--9191Chr07:22829665..22829689 (25 bp)
TGCCTTTTGCAATCTTTCAGACAAT
LOC_Os07g38070
Os.27184.1.S1_at--836--9651Chr07:22829681..22829705 (25 bp)
TCAGACAATTTGAGTCGCAGTTATC
LOC_Os07g38070
Os.27184.1.S1_at--574--6091Chr07:22829692..22829716 (25 bp)
GAGTCGCAGTTATCAACAATTGGAT
LOC_Os07g38070
Os.27184.1.S1_at--988--2231Chr07:22829707..22829731 (25 bp)
ACAATTGGATGAGTGCGTCTTTGTT
LOC_Os07g38070
Os.27184.1.S1_at--1125--991Chr07:22829738..22829762 (25 bp)
AGGATTATCGATCTGGTTCACTTAA
LOC_Os07g38070
Os.27184.1.S1_at--158--10151Chr07:22829743..22829767 (25 bp)
TATCGATCTGGTTCACTTAAATCAA
LOC_Os07g38070
Os.27184.1.S1_at--723--1811Chr07:22829773..22829797 (25 bp)
ACTGTTCCCGATGTTTCTTCCCAAG
LOC_Os07g38070
Os.27184.1.S1_at--81--751Chr07:22829783..22829807 (25 bp)
ATGTTTCTTCCCAAGCGCTATGATA
LOC_Os07g38070
Os.27184.1.S1_at--246--3251Chr07:22829794..22829818 (25 bp)
CAAGCGCTATGATACAGGAAGTGTC
LOC_Os07g38070
Os.27184.1.S1_at--345--9871Chr07:22829806..22829829 (24 bp)
TACAGGAAGTGTCAATTCAAATGGC
LOC_Os07g38070
Target Sequence 
TTAATGCTACTATATTGCCTTTTGCAATCTTTCAGACAATTTGAGTCGCAGTTATCAACAATTGGATGAGTGCGTCTTTG
TTNAAACAAGGATTATCGATCTGGTTCACTTAAATCAANNNNNACTGTTCCCGATGTTTCTTCCCAAGCGCTATGATACA
GGAAGTGTCAATTCAAATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis