Browse Element(s) Details


Os.10334.1.S1_at

Description gb:AB125309.1
DB_XREF= gi:46917343
GEN=SAPK8
TID=Os.10334.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10334 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) SAPK8 mRNA for serinethreonine protein kinase SAPK8, complete cds.
PROD=serinethreonine protein kinase SAPK8
FL= gb:AB125309.1 gb:AK060479.1 gb:AK104299.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5560011/11Serine/threonine-protein kinase SAPK9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55570Os.50269.1.S1_at11/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55570OsAffx.3616.1.S1_at9/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55590Os.25453.1.A1_at11/113+31582727..31585102myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55600Os.10334.1.S1_at11/113+31591670..31597086Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os03g55610Os.10328.1.S1_at10/113+31601273..31602898Dof domain, zinc finger family protein, expressed
LOC_Os03g55620Os.12658.1.S1_at11/113+31613534..31617659Serine/threonine-protein kinase 12, putative, expressed
LOC_Os03g55630Os.51409.1.S1_at11/113+31619883..31620695expressed protein
LOC_Os03g55640Os.17562.1.S1_at11/113+31621061..31623992signal peptidase I family protein, expressed
LOC_Os03g55640Os.17562.2.S1_x_at11/113+31621061..31623992signal peptidase I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0010119biological_processregulation of stomatal movement
GO:0004672molecular_functionprotein kinase activity
GO:0009931molecular_functioncalcium-dependent protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10334.1.S1_at--507--5851Chr03:31596536..31596560 (25 bp)
GAGCCATGGCTGGTTCTTGAAGAAC
LOC_Os03g55600
Os.10334.1.S1_at--717--5371Chr03:31596554..31596578 (25 bp)
GAAGAACCTTCCTGCAGATTTGATG
LOC_Os03g55600
Os.10334.1.S1_at--1153--5111Chr03:31596647..31596671 (25 bp)
GCAAATTTTAACTGAGGCCACCATA
LOC_Os03g55600
Os.10334.1.S1_at--210--9991Chr03:31596670..31596694 (25 bp)
TACCACCTGCTTGCTCTCGAATAAA
LOC_Os03g55600
Os.10334.1.S1_at--775--531Chr03:31596699..31596723 (25 bp)
ATCCTAACTGATGGACTCGACCTAG
LOC_Os03g55600
Os.10334.1.S1_at--589--691Chr03:31596736..31596760 (25 bp)
ATGACCTCGATTCCGACTCAGATAT
LOC_Os03g55600
Os.10334.1.S1_at--11--4551Chr03:31596836..31596860 (25 bp)
GCCCTGATGTGTACCTTGTCAAAGT
LOC_Os03g55600
Os.10334.1.S1_at--338--2311Chr03:31596856..31596880 (25 bp)
AAAGTACTAGCAGCCCTTTGTGAAA
LOC_Os03g55600
Os.10334.1.S1_at--892--1471Chr03:31596881..31596905 (25 bp)
AGAATCGTTCTGTATTTTGCTTAGT
LOC_Os03g55600
Os.10334.1.S1_at--460--10251Chr03:31596896..31596920 (25 bp)
TTTGCTTAGTTTCTTGCCGTGGAAC
LOC_Os03g55600
Os.10334.1.S1_at--295--71Chr03:31597006..31597030 (25 bp)
ATTGCTGAGGCCTGGTTACCTTTAA
LOC_Os03g55600
Target Sequence 
GAGCCATGGCTGGTTCTTGAAGAACCTTCCTGCAGATTTGATGGACGATGATAGTATGAGCAGCCAGTATGAGGAACCTG
ATCAGCCAATGCAAACCATGGATCAGATCATGCAAATTTTAACTGAGGCCACCATACCACCTGCTTGCTCTCGAATAAAC
CACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAGATATTGATGTTGATAGCAG
CGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAGAGAACTGAAGGGGCAGGGTGCCCTGATGTGTACCTTGTC
AAAGTACTAGCAGCCCTTTGTGAAAAGAATCGTTCTGTATTTTGCTTAGTTTCTTGCCGTGGAACCCCAGCGATGTTCCC
ATGAACTCATGATGCTGTTGTAATTGAACTGGGGTTACTTCCCTGGAATAACAGCTTTCCTCCTCCCCCCATTGCTGAGG
CCTGGTTACCTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis