Browse Element(s) Details


OsAffx.3616.1.S1_at

Description tigr:9631.m05420
TID=OsAffx.3616.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative parathymosin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g555709/11SWIB complex BAF60b domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55530OsAffx.3615.1.S1_s_at11/113+31536788..31538748N-acetyltransferase, putative, expressed
LOC_Os03g55540Os.7912.1.S1_at11/113+31543898..31545156Zinc-finger protein 1, putative, expressed
LOC_Os03g55550OsAffx.13494.1.S1_at11/113+31547516..31550447Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g55560Os.39067.1.A1_s_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.37832.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.54700.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55570Os.50269.1.S1_at11/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55570OsAffx.3616.1.S1_at9/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55590Os.25453.1.A1_at11/113+31582727..31585102myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55600Os.10334.1.S1_at11/113+31591670..31597086Serine/threonine-protein kinase SAPK9, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3616.1.S1_at--368--2751NONE
AAGAAGCGGCGATCAGATGGAGCCA
NONE
OsAffx.3616.1.S1_at--212--9471NONE
TCTGAGCATGGAGGTCCTGTGACCT
NONE
OsAffx.3616.1.S1_at--817--3771Chr03:31566501..31566525 (25 bp)
CTCTGCCTCACCTGAGAGATCAACA
LOC_Os03g55570
OsAffx.3616.1.S1_at--815--9671Chr03:31566508..31566532 (25 bp)
TCACCTGAGAGATCAACACCCAAAG
LOC_Os03g55570
OsAffx.3616.1.S1_at--200--2271Chr03:31566522..31566546 (25 bp)
AACACCCAAAGAGAAGCCTCAAAAG
LOC_Os03g55570
OsAffx.3616.1.S1_at--47--3911Chr03:31566665..31566689 (25 bp)
CTGGGTCTGGATCTGGTTTTCTTGT
LOC_Os03g55570
OsAffx.3616.1.S1_at--236--491Chr03:31566675..31566699 (25 bp)
ATCTGGTTTTCTTGTGCCCCTTCAA
LOC_Os03g55570
OsAffx.3616.1.S1_at--766--4531Chr03:31566690..31566714 (25 bp)
GCCCCTTCAACTTTCGGATGATTTA
LOC_Os03g55570
OsAffx.3616.1.S1_at--1005--5591Chr03:31566717..31566741 (25 bp)
GAAATTCATTGGCACTGGTGAGAGT
LOC_Os03g55570
OsAffx.3616.1.S1_at--878--1951Chr03:31566730..31566754 (25 bp)
ACTGGTGAGAGTATGCTTTCGCGAT
LOC_Os03g55570
OsAffx.3616.1.S1_at--895--631Chr03:31566742..31566766 (25 bp)
ATGCTTTCGCGATCTGATGTTGTGA
LOC_Os03g55570
Target Sequence 
AAGAAGCGGCGATCAGATGGAGCCAATACTGATGGCAAGAGAAAAGGTGGTGGCTTCACCAAATTATGTAGCATTTCCCC
AACGCTTCAAGAGTTTGTTGGTGCCTCTGAGTTAGCTAGGACAGAGGTAGTCAAGAAGCTTTGGGCATATATCCGAGAAA
ATAACTTGCAAGACCCAAGCAATAAGAGGAAGATTCTGATAAAATTTCTGATCACTGATGAATACACTACAACACAGAAT
TGTGCGCGGGCACTGCAGTACATAATAAGGTTTTTGAAATCTGAGCATGGAGGTCCTGTGACCTCTGCCTCACCTGAGAG
ATCAACACCCAAAGAGAAGCCTCAAAAGAGAGAAAGAAATGAAGGGAAGAAGCAAAAAGGTGGTTCTTCTGGGTCTGGAT
CTGGTTTTCTTGTGCCCCTTCAACTTTCGGATGATTTAGTGAAATTCATTGGCACTGGTGAGAGTATGCTTTCGCGATCT
GATGTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis