Browse Element(s) Details


OsAffx.13494.1.S1_at

Description tigr:9631.m05418
TID=OsAffx.13494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5555011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55510NANA3+31530612..31530845hypothetical protein
LOC_Os03g55530OsAffx.3615.1.S1_s_at11/113+31536788..31538748N-acetyltransferase, putative, expressed
LOC_Os03g55540Os.7912.1.S1_at11/113+31543898..31545156Zinc-finger protein 1, putative, expressed
LOC_Os03g55550OsAffx.13494.1.S1_at11/113+31547516..31550447Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g55560Os.39067.1.A1_s_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.37832.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.54700.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55570Os.50269.1.S1_at11/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55570OsAffx.3616.1.S1_at9/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13494.1.S1_at--995--6071Chr03:31549613..31549637 (25 bp)
GAGTAGTACTCCGTGACGCGGCGCC
LOC_Os03g55550
OsAffx.13494.1.S1_at--1079--1331Chr03:31549798..31549822 (25 bp)
AGAGTATGCAGAGCGGCAGCTGCTC
LOC_Os03g55550
OsAffx.13494.1.S1_at--1025--1591Chr03:31549815..31549839 (25 bp)
AGCTGCTCCGACAACGAGTCCAATT
LOC_Os03g55550
OsAffx.13494.1.S1_at--893--1131Chr03:31549831..31549855 (25 bp)
AGTCCAATTGCTCCCAAGTGAACCG
LOC_Os03g55550
OsAffx.13494.1.S1_at--1024--8971Chr03:31549849..31549873 (25 bp)
TGAACCGCCGCAAGGTGGATCGTGT
LOC_Os03g55550
OsAffx.13494.1.S1_at--431--8011Chr03:31550056..31550080 (25 bp)
GGAGGCTCCGGATTTTGCAGAAGCT
LOC_Os03g55550
OsAffx.13494.1.S1_at--40--9051Chr03:31550071..31550095 (25 bp)
TGCAGAAGCTGGTACCTAATGGAAC
LOC_Os03g55550
OsAffx.13494.1.S1_at--434--7991Chr03:31550227..31550251 (25 bp)
GGAGGCCGTCCATTACGTGAAGTTC
LOC_Os03g55550
OsAffx.13494.1.S1_at--436--2831Chr03:31550246..31550270 (25 bp)
AAGTTCTTGCAGCTACAGATCAAGG
LOC_Os03g55550
OsAffx.13494.1.S1_at--922--10811Chr03:31550342..31550366 (25 bp)
TTGTCATGATCAGATGCTTAGCTCT
LOC_Os03g55550
OsAffx.13494.1.S1_at--238--6991Chr03:31550381..31550405 (25 bp)
GTACGCACCGATTGTTTACAATGGC
LOC_Os03g55550
Target Sequence 
GAGTAGTACTCCGTGACGCGGCGCCGCAGGCGAAGCGGAGGACTCAGGCCGGCCATGGAGGAGATCTTGGACGGCAGAAG
AAGAAAGCTCGAGTTTCAGATAAGCGGAATCAGGAGAGTATGCAGAGCGGCAGCTGCTCCGACAACGAGTCCAATTGCTC
CCAAGTGAACCGCCGCAAGGTGGATCGTGTCGCCGGCGGCGGAAACGGGAAGGTTCCGGCTCGCCGGAGGTCGGCGACCA
TTGCCCAGAGCCTCTATGCAAGGAGAAGAAGAGAGAGGATCAATGGGAGGCTCCGGATTTTGCAGAAGCTGGTACCTAAT
GGAACCAAAGTGGATATCAGCACAATGCTTGAGGAGGCCGTCCATTACGTGAAGTTCTTGCAGCTACAGATCAAGGTAGA
AGTCCAAATAGTTTGTCATGATCAGATGCTTAGCTCTGATGAGCTGTGGATGTACGCACCGATTGTTTACAATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis