Browse Element(s) Details


Os.54700.1.S1_at

Description gb:AK106496.1
DB_XREF= gi:32991705
TID=Os.54700.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-D09, full insert sequence.
FL= gb:AK106496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5556011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55510NANA3+31530612..31530845hypothetical protein
LOC_Os03g55530OsAffx.3615.1.S1_s_at11/113+31536788..31538748N-acetyltransferase, putative, expressed
LOC_Os03g55540Os.7912.1.S1_at11/113+31543898..31545156Zinc-finger protein 1, putative, expressed
LOC_Os03g55550OsAffx.13494.1.S1_at11/113+31547516..31550447Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g55560Os.39067.1.A1_s_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.37832.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.54700.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55570Os.50269.1.S1_at11/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55570OsAffx.3616.1.S1_at9/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55590Os.25453.1.A1_at11/113+31582727..31585102myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54700.1.S1_at--509--9011Chr03:31555340..31555364 (25 bp)
TGCATAGGTAACCTTTTCTCTTTTT
LOC_Os03g55560
Os.54700.1.S1_at--1086--351Chr03:31555294..31555318 (25 bp)
ATAATGGCCATCTCACTATGTGAAA
LOC_Os03g55560
Os.54700.1.S1_at--741--3651Chr03:31555258..31555282 (25 bp)
CTTACCTTTTGTTCAGCTCTTTTAG
LOC_Os03g55560
Os.54700.1.S1_at--629--1571Chr03:31555244..31555268 (25 bp)
AGCTCTTTTAGATGGTCTCCTTTTA
LOC_Os03g55560
Os.54700.1.S1_at--551--9251Chr03:31555194..31555218 (25 bp)
TCCTATTTCTGTGCCATTTTGGTTT
LOC_Os03g55560
Os.54700.1.S1_at--611--731Chr03:31555156..31555180 (25 bp)
ATGTTTTTGTGTTTTCTCAAGCTTA
LOC_Os03g55560
Os.54700.1.S1_at--717--1551Chr03:31555137..31555161 (25 bp)
AGCTTATTTTGTATTTGTACCCACA
LOC_Os03g55560
Os.54700.1.S1_at--195--8751Chr03:31555122..31555146 (25 bp)
TGTACCCACATTCATCTTATAGCTG
LOC_Os03g55560
Os.54700.1.S1_at--811--9991Chr03:31554915..31555127 (25 bp)
TAGCTGATTCAGATCCCACAAATTT
LOC_Os03g55560
Os.54700.1.S1_at--45--8131Chr03:31554470..31554494 (25 bp)
GGACTCCATTTTGGATTCCAGTAGA
LOC_Os03g55560
Os.54700.1.S1_at--254--6431Chr03:31554338..31554362 (25 bp)
GATCATAGCCAGAATCCTACCTAGG
LOC_Os03g55560
Target Sequence 
TGCATAGGTAACCTTTTCTCTTTTTTCTGTTTCATTTGTTTAACTAATAATGGCCATCTCACTATGTGAAAGTTTTCTTG
AACTTACCTTTTGTTCAGCTCTTTTAGATGGTCTCCTTTTATTTTTTACATGTAGAGATTTCTTCATCCTATTTCTGTGC
CATTTTGGTTTCTATTGTTTGTTTATGTTTTTGTGTTTTCTCAAGCTTATTTTGTATTTGTACCCACATTCATCTTATAG
CTGATTCAGATCCCACAAATTTAAAAAATTGGACTCCATTTTGGATTCCAGTAGATTTTTGAATTGGCTAGAATATGATT
CCAATTCAAATATTTATGTTTGGATGAGTGGAATTATAACAATGAATCAACTCAGAAAAAAGTGTTTGGATGTTGAGATT
GGGATCATAGCCAGAATCCTACCTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis