Browse Element(s) Details


Os.50269.1.S1_at

Description gb:AK120443.1
DB_XREF= gi:37990066
TID=Os.50269.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099D11, full insert sequence.
FL= gb:AK120443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5557011/11SWIB complex BAF60b domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55530OsAffx.3615.1.S1_s_at11/113+31536788..31538748N-acetyltransferase, putative, expressed
LOC_Os03g55540Os.7912.1.S1_at11/113+31543898..31545156Zinc-finger protein 1, putative, expressed
LOC_Os03g55550OsAffx.13494.1.S1_at11/113+31547516..31550447Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g55560Os.39067.1.A1_s_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.37832.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.54700.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55570Os.50269.1.S1_at11/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55570OsAffx.3616.1.S1_at9/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55590Os.25453.1.A1_at11/113+31582727..31585102myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55600Os.10334.1.S1_at11/113+31591670..31597086Serine/threonine-protein kinase SAPK9, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50269.1.S1_at--430--7091Chr03:31564932..31564956 (25 bp)
GTCAACTCCATCGATATGTTCCAAA
LOC_Os03g55570
Os.50269.1.S1_at--522--10751Chr03:31564968..31564992 (25 bp)
TTGACGAAACACATATGGCCATTGA
LOC_Os03g55570
Os.50269.1.S1_at--966--4571Chr03:31565061..31565085 (25 bp)
GCGCTCGCGCACAAACACAGGAAGA
LOC_Os03g55570
Os.50269.1.S1_at--906--2291Chr03:31565086..31565110 (25 bp)
AAATGGGCACACACTGTGGTCCAAC
LOC_Os03g55570
Os.50269.1.S1_at--878--7491Chr03:31565101..31565125 (25 bp)
GTGGTCCAACTTATTACAGTGCAAT
LOC_Os03g55570
Os.50269.1.S1_at--992--5191Chr03:31565121..31565145 (25 bp)
GCAATTTTCAGTATACTTTCCTCAA
LOC_Os03g55570
Os.50269.1.S1_at--992--2451Chr03:31565144..31565168 (25 bp)
AACAAGTTACCATCATCTGGCCCTT
LOC_Os03g55570
Os.50269.1.S1_at--648--3551Chr03:31565157..31565181 (25 bp)
CATCTGGCCCTTGCCTATTACATAG
LOC_Os03g55570
Os.50269.1.S1_at--225--6511Chr03:31565183..31565207 (25 bp)
GATATGTGTACTAACCCAAACAGGA
LOC_Os03g55570
Os.50269.1.S1_at--954--1171Chr03:31565208..31565232 (25 bp)
AGTACATAGAACCTGCTGTTTCATG
LOC_Os03g55570
Os.50269.1.S1_at--363--3511Chr03:31565229..31565253 (25 bp)
CATGTTAATTTACTCCTGACTAGGT
LOC_Os03g55570
Target Sequence 
GTCAACTCCATCGATATGTTCCAAATGAATAAAGCATTGACGAAACACATATGGCCATTGAATTCTGATGGTCTCTTTCT
CTTTCTCTCCCCTGCCCCCCCCCCTCTCTCTCTCTCTCTCTATACACACGCGCTCGCGCACAAACACAGGAAGAAAATGG
GCACACACTGTGGTCCAACTTATTACAGTGCAATTTTCAGTATACTTTCCTCAACAAGTTACCATCATCTGGCCCTTGCC
TATTACATAGAGATATGTGTACTAACCCAAACAGGAAGTACATAGAACCTGCTGTTTCATGTTAATTTACTCCTGACTAG
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis