Browse Element(s) Details


Os.39067.1.A1_s_at

Description gb:CB657958
DB_XREF= gi:29661683
DB_XREF=OSJNEc13K12.r
CLONE=OSJNEc13K12
TID=Os.39067.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.39067 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_569040.1 (A.thaliana) MAP protein kinase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5556011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55510NANA3+31530612..31530845hypothetical protein
LOC_Os03g55530OsAffx.3615.1.S1_s_at11/113+31536788..31538748N-acetyltransferase, putative, expressed
LOC_Os03g55540Os.7912.1.S1_at11/113+31543898..31545156Zinc-finger protein 1, putative, expressed
LOC_Os03g55550OsAffx.13494.1.S1_at11/113+31547516..31550447Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g55560Os.39067.1.A1_s_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.37832.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.54700.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55570Os.50269.1.S1_at11/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55570OsAffx.3616.1.S1_at9/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55590Os.25453.1.A1_at11/113+31582727..31585102myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39067.1.A1_s_at--548--4911Chr03:31551948..31551972 (25 bp)
GCTTGACAGCCCTGCCAAATTTGGA
LOC_Os03g55560
Os.39067.1.A1_s_at--454--10011Chr03:31551917..31551941 (25 bp)
TAGCTTATCCCCTACGCCGATGAGT
LOC_Os03g55560
Os.39067.1.A1_s_at--172--9951Chr03:31551905..31551929 (25 bp)
TACGCCGATGAGTTTGAGGTCCAGT
LOC_Os03g55560
Os.39067.1.A1_s_at--505--7691Chr03:31551644..31551668 (25 bp)
GGGTCTTGTAAAGTACTTGGCATGC
LOC_Os03g55560
Os.39067.1.A1_s_at--1048--9871Chr03:31551631..31551655 (25 bp)
TACTTGGCATGCGAAGGACATCAGC
LOC_Os03g55560
Os.39067.1.A1_s_at--791--5532Chr11:22352993..22353013 (21 bp)
GAAACCTGTAATGTTTGTTTTCAAG
NONE
Os.39067.1.A1_s_at--940--2271Chr03:31551557..31551581 (25 bp)
AAATGATGGCGTTTCCTTTGTAAGA
LOC_Os03g55560
Os.39067.1.A1_s_at--724--4711Chr03:31551517..31551541 (25 bp)
GCTGTAGGTTAAACTAATGGCCCTG
LOC_Os03g55560
Os.39067.1.A1_s_at--1047--2951Chr03:31551502..31551526 (25 bp)
AATGGCCCTGATTGTTGCCAACAGG
LOC_Os03g55560
Os.39067.1.A1_s_at--131--9211Chr03:31551487..31551511 (25 bp)
TGCCAACAGGTAGGACACTAGGGTT
LOC_Os03g55560
Os.39067.1.A1_s_at--154--10051Chr03:31551461..31551485 (25 bp)
TAGTTGTAGCTTGTGTTGTTTTTGC
LOC_Os03g55560
Target Sequence 
GCTTGACAGCCCTGCCAAATTTGGAAANTNGTAGCTTATCCCCTACGCCGATGAGTTTGAGGTCCAGTNCTGGNTCTGNG
GCCCATACNCNTAGTATGCNCTTTTNTATNGCATACCATCAGCNTAGTCCATTGCCAAGGCCAAATGGAAAGGAAGCAAT
AAATTTGTTCNCNTTGAAGCATGANGAGNTGCCTACNTAAGTCATCATAATTGAACATTCGNTGGGTCTTGTAAAGTACT
TGGCATGCGAAGGACATCAGCANGGTANGATCGCAATAGCTTNTGAAACCTGTAATGTTTGTTTTCAAGGAAATGATGGC
GTTTCCTTTGTAAGATATTATTTAGGGTTAGCTGTAGGTTAAACTAATGGCCCTGATTGTTGCCAACAGGTAGGACACTA
GGGTTGTAGTTGTAGCTTGTGTTGTTTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39067.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis