Browse Element(s) Details


Os.7912.1.S1_at

Description gb:AF332876.1
DB_XREF= gi:12698881
TID=Os.7912.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.7912 (NCBI UniGene Cluster)
DEF=Oryza sativa zinc finger transcription factor ZF1 mRNA, complete cds.
PROD=zinc finger transcription factor ZF1
FL= gb:AK072942.1 gb:AF332876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5554011/11Zinc-finger protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55510NANA3+31530612..31530845hypothetical protein
LOC_Os03g55530OsAffx.3615.1.S1_s_at11/113+31536788..31538748N-acetyltransferase, putative, expressed
LOC_Os03g55540Os.7912.1.S1_at11/113+31543898..31545156Zinc-finger protein 1, putative, expressed
LOC_Os03g55550OsAffx.13494.1.S1_at11/113+31547516..31550447Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g55560Os.39067.1.A1_s_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.37832.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55560Os.54700.1.S1_at11/113+31551386..31558473Protein kinase domain containing protein, expressed
LOC_Os03g55570Os.50269.1.S1_at11/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55570OsAffx.3616.1.S1_at9/113+31562024..31568897SWIB complex BAF60b domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010200biological_processresponse to chitin
GO:0042538biological_processhyperosmotic salinity response
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7912.1.S1_at--412--2131Chr03:31544507..31544531 (25 bp)
ACAGGTGTTCCATCTGCCAGAAGGA
LOC_Os03g55540
Os.7912.1.S1_at--546--7931Chr03:31544179..31544203 (25 bp)
GGATCCGATCCGTCAGAGAGTTTTT
LOC_Os03g55540
Os.7912.1.S1_at--214--112Chr08:12352670..12352694 (25 bp)
ATTCGTTGATTCGTTTTGTGCCGCT
NONE
Os.7912.1.S1_at--297--7292Chr08:12352687..12352711 (25 bp)
GTGCCGCTATTGTTTAATTTGTTCC
NONE
Os.7912.1.S1_at--1130--10251Chr03:31544088..31544112 (25 bp)
TTTGTTCCTGCTTTTGTACAGAGCA
LOC_Os03g55540
Os.7912.1.S1_at--1002--2671Chr03:31544064..31544088 (25 bp)
AAGCGAGTGATACATAGCCATACAT
LOC_Os03g55540
Os.7912.1.S1_at--209--1271Chr03:31544029..31544053 (25 bp)
AGATATAGGTCTAGCTCTTCCTTGG
LOC_Os03g55540
Os.7912.1.S1_at--993--1572Chr08:12352774..12352795 (22 bp)
AGCTCTTCCTTGGTTCTTTGTAACA
NONE
Os.7912.1.S1_at--193--3671Chr03:31544002..31544026 (25 bp)
CTTTGTAACACTGGAACTGTACCTG
LOC_Os03g55540
Os.7912.1.S1_at--320--5472Chr08:12352801..12352825 (25 bp)
GAACTGTACCTGTATCTTTTACACT
NONE
Os.7912.1.S1_at--524--10471Chr03:31543971..31543995 (25 bp)
TTACACTTTGTTCTTTGACAGTCAT
LOC_Os03g55540
Target Sequence 
ACAGGTGTTCCATCTGCCAGAAGGAGTTCCCCACCGGGCAGGCGCTCGGCGGGCACAAGAGGAAGCACTACGACGGTGGC
GTAGGCGCCGGCGCCGGCGCATCTTCAACCGAGCTCCTGGCCACGGTGGCCGCCGAGTCCGAGGTGGGAAGCTCCGGCAA
CGGCCAGTCCGCCACCCGGGCGTTCGACCTCAACCTCCCGGCCGTGCCGGAGTTCGTGTGGCGGCCGTGCTCCAAGGGCA
AGAAGATGTGGGACGAGGAGGANGGAGGTCCAGAGCCCCCTCGCCTTCAAGAAGCCCCGGCTTCTCACCGCGTAATTCAG
CAGCTGCATGGATCCGATCCGTCAGAGAGTTTTTGTCTAGGGAGTGAAATTCAGTCGAAACACACTATTCGTTGATTCGT
TTTGTGCCGCTATTGTTTAATTTGTTCCTGCTTTTGTACAGAGCAAGCGAGTGATACATAGCCATACATACAGTCATACA
GATATAGGTCTAGCTCTTCCTTGGTTCTTTGTAACACTGGAACTGTACCTGTATCTTTTACACTTTGTTCTTTGACAGTC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis