Browse Element(s) Details

Os.10381.1.S1_at

Description

gb:AK067799.1
DB_XREF= gi:32977817
TID=Os.10381.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.10381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114C10, full insert sequence.
FL= gb:AK067799.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06080	11/11	serine esterase family protein, expressed
LOC_Os05g11770	1/11	Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os01g21810	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06040	Os.46439.1.S1_at	11/11	6	+	2773438..2778880	thiol methyltransferase, putative, expressed
LOC_Os06g06040	Os.21058.1.S1_s_at	11/11	6	+	2773438..2778880	thiol methyltransferase, putative, expressed
LOC_Os06g06040	OsAffx.15281.1.S1_at	9/11	6	+	2773438..2778880	thiol methyltransferase, putative, expressed
LOC_Os06g06050	Os.18946.2.S1_at	11/11	6	+	2779789..2784227	F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06050	Os.18946.1.S1_at	11/11	6	+	2779789..2784227	F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06060	NA	NA	6	+	2785775..2789141	retrotransposon protein, putative, unclassified
LOC_Os06g06070	NA	NA	6	+	2790043..2792657	retrotransposon protein, putative, unclassified
LOC_Os06g06080	Os.10381.1.S1_at	11/11	6	+	2802043..2805272	serine esterase family protein, expressed
LOC_Os06g06090	Os.19011.1.S1_at	11/11	6	+	2805544..2811939	Mitogen-activated protein kinase homolog 6, putative, expressed
LOC_Os06g06100	Os.14296.1.S1_at	3/11	6	+	2814948..2816061	Dihydroneopterin aldolase, putative, expressed
LOC_Os06g06110	OsAffx.22940.2.S1_s_at	11/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	Os.35344.3.S1_x_at	9/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.3.S1_x_at	9/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	Os.35344.18.S1_x_at	9/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.5.S1_x_at	8/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.2.S1_at	8/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.1.S1_s_at	7/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.5.S1_at	1/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.31552.2.S1_at	1/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10381.1.S1_at--356--71	1	Chr06:2804611..2804635 (25 bp)	ATGATCCATGGCTTGCAGAGGGTCG	LOC_Os06g06080
Os.10381.1.S1_at--773--627	1	Chr06:2804650..2804674 (25 bp)	GATGTCAACTTCCATACAGCACTAT	LOC_Os06g06080
Os.10381.1.S1_at--597--511	1	Chr06:2804668..2804692 (25 bp)	GCACTATGGCCTTACTTTGCTCATA	LOC_Os06g06080
Os.10381.1.S1_at--361--815	1	Chr06:2804875..2804899 (25 bp)	GGAAATATTTCCGTGCCAACTTATA	LOC_Os06g06080
Os.10381.1.S1_at--175--367	1	Chr06:2804894..2804918 (25 bp)	CTTATAAGATCTTCAGTCCCCTGTG	LOC_Os06g06080
Os.10381.1.S1_at--229--115	1	Chr06:2804908..2804932 (25 bp)	AGTCCCCTGTGCTGCATGGTCAGAA	LOC_Os06g06080
Os.10381.1.S1_at--637--273	1	Chr06:2804963..2804987 (25 bp)	AAGCAAAGGTTTTGCCTCTCTAGTA	LOC_Os06g06080
Os.10381.1.S1_at--1108--715	1	Chr06:2805002..2805026 (25 bp)	GTCTCAGTAGTAAGCAGTGTCCCAA	LOC_Os06g06080
Os.10381.1.S1_at--1156--645	14	Chr09:18930082..18930101 (20 bp)	GATAATCCAGATTCGTTGTTCTAGG	NONE
Os.10381.1.S1_at--320--157	1	Chr06:2805159..2805183 (25 bp)	AGCTAGTTACTGTATTTTTGTCCAC	LOC_Os06g06080
Os.10381.1.S1_at--738--1035	1	Chr06:2805195..2805219 (25 bp)	TTTTTCTTTCGCACAGACGTACAGT	LOC_Os06g06080

Target Sequence

ATGATCCATGGCTTGCAGAGGGTCGGTTGGAAGAAAGTAGATGTCAACTTCCATACAGCACTATGGCCTTACTTTGCTCA
TAACAACATACATGTTAAGAATGAGTGGCTTCACAATGCCGGTGCCGGCGTCATCGCCCATGTGGCGGACAGCATAAAAC
AGCAGGAGTCACGGAAATATTTCCGTGCCAACTTATAAGATCTTCAGTCCCCTGTGCTGCATGGTCAGAAGTATAATAAC
TATGGTTTCCTAAATAACCAAAGCAAAGGTTTTGCCTCTCTAGTAGGAGTGTAGGACTTGTCTCAGTAGTAAGCAGTGTC
CCAAAAAAAAAAACTCAACCTAAGGATAATCCAGATTCGTTGTTCTAGGAGGGGTCACATCCCCTTCTATGTTGAGTTTT
TTTTTTTTNNGGGACGGATGGAGTANGTTCGATGTGTTTAGTGTGGATATAGAAAACTAGCTAGTTACTGTATTTTTGTC
CACAAAAGCTTTTTTTTTTCTTTCGCACAGACGTACAGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis