Browse Element(s) Details


Os.10429.1.S1_at

Description gb:AK100956.1
DB_XREF= gi:32986165
TID=Os.10429.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10429 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140F10, full insert sequence.
FL= gb:AK100956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0365011/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g081901/11Transcriptional corepressor LEUNIG, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03620OsAffx.16811.1.S1_at11/118+1703682..1708669TPR Domain containing protein
LOC_Os08g03620OsAffx.16811.2.S1_at2/118+1703682..1708669TPR Domain containing protein
LOC_Os08g03630Os.52256.1.S1_at11/118+1710152..1713537acyl-activating enzyme 14, putative, expressed
LOC_Os08g03640Os.12290.1.S1_at11/118+1714065..171679560S acidic ribosomal protein P0, putative, expressed
LOC_Os08g03650Os.10429.1.S1_at11/118+1717285..1723595transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g03660OsAffx.22940.2.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.1.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.18.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.3.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.3.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.2.S1_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.31552.2.S1_at1/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03670Os.12605.1.S1_s_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed
LOC_Os08g03670OsAffx.16812.2.S1_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed
LOC_Os08g03676Os.52441.1.S1_at11/118+1743506..1746109glycerine-rich protein, putative, expressed
LOC_Os08g03682Os.49633.1.S1_at11/118+1746781..1749181Cytochrome P450 family protein, expressed
LOC_Os08g03682OsAffx.16813.1.S1_x_at11/118+1746781..1749181Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10429.1.S1_at--178--8271Chr08:1717845..1717869 (25 bp)
GGCAGATTCTCCCTCAACATGAAAC
LOC_Os08g03650
Os.10429.1.S1_at--865--6511Chr08:1717816..1717840 (25 bp)
GATTTGCAGCACCAAGGAGGCTATT
LOC_Os08g03650
Os.10429.1.S1_at--1091--9951Chr08:1717644..1717668 (25 bp)
TACCAATCCTTTTCACTTTTCTTCT
LOC_Os08g03650
Os.10429.1.S1_at--36--9771Chr08:1717604..1717628 (25 bp)
TAATCGAGTGCCATCAGCTCAGTAG
LOC_Os08g03650
Os.10429.1.S1_at--1089--9151Chr08:1717573..1717597 (25 bp)
TGCCGTGTTGGTGTCGTAACTGCGA
LOC_Os08g03650
Os.10429.1.S1_at--95--6791Chr08:1717533..1717557 (25 bp)
GTTAGAGTGTTTTACATCCATCCAT
LOC_Os08g03650
Os.10429.1.S1_at--720--9972Chr01:3975193..3975212 (20 bp)
TACCTGTTCATTTTCTGGTGCTAAG
LOC_Os01g08190
Os.10429.1.S1_at--905--8211Chr08:1717389..1717413 (25 bp)
GGAATTTGGATCACATCTCATTGGA
LOC_Os08g03650
Os.10429.1.S1_at--462--3611Chr08:1717371..1717395 (25 bp)
CATTGGATTGTTTCTTCTGTGCGTC
LOC_Os08g03650
Os.10429.1.S1_at--1096--6451Chr08:1717339..1717363 (25 bp)
GATAAATCGGCACGTTTGGTTCTTT
LOC_Os08g03650
Os.10429.1.S1_at--537--7891Chr08:1717322..1717346 (25 bp)
GGTTCTTTGCCAATCCTAACATTAT
LOC_Os08g03650
Target Sequence 
GGCAGATTCTCCCTCAACATGAAACCACAGATTTGCAGCACCAAGGAGGCTATTCCGACGACAGCGACGACAACGGCGAC
GGCGAGCGAGGAGAAGATGGCCGTGGTGAAGGGTGACACCACGCCACGGCTGAAGCTCAGCAGGCACAAGAAGAAGCTGT
CCATAGAAGCATGATGATGATGATCCGNTGATCACTCACACTACCAATCCTTTTCACTTTTCTTCTTCTCTGAATTCTTG
ATAATCGAGTGCCATCAGCTCAGTAGATGTGTTGCCGTGTTGGTGTCGTAACTGCGAACTTAGTGAGTTGTTGTTAGAGT
GTTTTACATCCATCCATCCATCCAGCAGGAGGAGAATCTAGTGAAAGAGCTGTTACCTGTTCATTTTCTGGTGCTAAGTT
TTTGACATTTTCATCATCATAGTAAAAATTGCCAAAGTGTTGTTAGCATATCTGTTGGAATTTGGATCACATCTCATTGG
ATTGTTTCTTCTGTGCGTCGACAGTAGATAAATCGGCACGTTTGGTTCTTTGCCAATCCTAACATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis