Browse Element(s) Details


Os.52441.1.S1_at

Description gb:AK067165.1
DB_XREF= gi:32977183
TID=Os.52441.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52441 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096N08, full insert sequence.
FL= gb:AK101091.1 gb:AK100132.1 gb:AK067165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0367611/11glycerine-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03650Os.10429.1.S1_at11/118+1717285..1723595transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g03660OsAffx.22940.2.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.1.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.18.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.3.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.3.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.2.S1_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.31552.2.S1_at1/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03670Os.12605.1.S1_s_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed
LOC_Os08g03670OsAffx.16812.2.S1_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed
LOC_Os08g03676Os.52441.1.S1_at11/118+1743506..1746109glycerine-rich protein, putative, expressed
LOC_Os08g03682Os.49633.1.S1_at11/118+1746781..1749181Cytochrome P450 family protein, expressed
LOC_Os08g03682OsAffx.16813.1.S1_x_at11/118+1746781..1749181Cytochrome P450 family protein, expressed
LOC_Os08g03690Os.16607.1.S1_at10/118+1749632..1750761Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g03700OsAffx.29017.1.S1_x_at11/118+1751367..1752854Acyltransferase family protein
LOC_Os08g03710OsAffx.9194.2.S1_at11/118+1753458..1754055hypothetical protein
LOC_Os08g03710OsAffx.2609.2.S1_x_at1/118+1753458..1754055hypothetical protein
LOC_Os08g03720NANA8+1758813..1764478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03730NANA8+1767059..1769600transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03740Os.47463.1.S1_x_at5/118+1769787..1770795transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03740Os.14491.2.S1_x_at5/118+1769787..1770795transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52441.1.S1_at--280--8431Chr08:1745544..1745568 (25 bp)
GGCCTGGTTATAGCCTTATTATGCA
LOC_Os08g03676
Os.52441.1.S1_at--417--391Chr08:1745652..1745676 (25 bp)
ATCATGTTACATGGCACTGCTAAAT
LOC_Os08g03676
Os.52441.1.S1_at--590--791Chr08:1745731..1745755 (25 bp)
ATGTGGATATCTGACCAGGTGCTTG
LOC_Os08g03676
Os.52441.1.S1_at--111--7331Chr08:1745749..1745773 (25 bp)
GTGCTTGGTGATATGCTGTTGGCCC
LOC_Os08g03676
Os.52441.1.S1_at--330--8811Chr08:1745765..1745789 (25 bp)
TGTTGGCCCAGAACTCGAGATCCAT
LOC_Os08g03676
Os.52441.1.S1_at--826--6031Chr08:1745781..1745805 (25 bp)
GAGATCCATTTTTCTGGCAGGTCCT
LOC_Os08g03676
Os.52441.1.S1_at--983--3911Chr08:1745794..1745818 (25 bp)
CTGGCAGGTCCTTATTTCTTATAGG
LOC_Os08g03676
Os.52441.1.S1_at--544--6331Chr08:1745837..1745861 (25 bp)
GATGCAGCTGAGTTTTCACCCTTAA
LOC_Os08g03676
Os.52441.1.S1_at--747--3071Chr08:1745868..1745892 (25 bp)
AATCATCTAACTTGCACTCTTCAAC
LOC_Os08g03676
Os.52441.1.S1_at--625--3271Chr08:1745905..1745929 (25 bp)
CACAAATAACTCCTTTTCACCACAA
LOC_Os08g03676
Os.52441.1.S1_at--632--5511Chr08:1746007..1746031 (25 bp)
GAACAATAGATCCTTTCTTTTCTGA
LOC_Os08g03676
Target Sequence 
GGCCTGGTTATAGCCTTATTATGCAGGATAAGGCCACTGAAATATAACACATACTGAGAACCTTCTAGTTGACTAGTTCT
AGATCTCTGACCGATGAAAACAAGAATGATCATGTTACATGGCACTGCTAAATGAGAATTAGGATGGCATAAAAAAGATA
TCACATGACTTGTACATAATGCCTAAAATGTGGATATCTGACCAGGTGCTTGGTGATATGCTGTTGGCCCAGAACTCGAG
ATCCATTTTTCTGGCAGGTCCTTATTTCTTATAGGATTAAGTTTGTCCATTTTGATGCAGCTGAGTTTTCACCCTTAACT
ATGAAATCATCTAACTTGCACTCTTCAACTACCAAAANGGGCACAAATAACTCCTTTTCACCACAAAAAAATGTCTTATT
TGGCCAGAATAACACTGGTGGTTTTAAGGGTAGGGGTTACACTGATTTTGATAGTTAAAGGGTGAACAATAGATCCTTTC
TTTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis