Browse Element(s) Details


OsAffx.29017.1.S1_x_at

Description tigr:9636.m00288
TID=OsAffx.29017.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Acyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0370011/11Acyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03660OsAffx.22940.2.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.1.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.18.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.3.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.3.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.2.S1_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.31552.2.S1_at1/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03670Os.12605.1.S1_s_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed
LOC_Os08g03670OsAffx.16812.2.S1_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed
LOC_Os08g03676Os.52441.1.S1_at11/118+1743506..1746109glycerine-rich protein, putative, expressed
LOC_Os08g03682Os.49633.1.S1_at11/118+1746781..1749181Cytochrome P450 family protein, expressed
LOC_Os08g03682OsAffx.16813.1.S1_x_at11/118+1746781..1749181Cytochrome P450 family protein, expressed
LOC_Os08g03690Os.16607.1.S1_at10/118+1749632..1750761Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g03700OsAffx.29017.1.S1_x_at11/118+1751367..1752854Acyltransferase family protein
LOC_Os08g03710OsAffx.9194.2.S1_at11/118+1753458..1754055hypothetical protein
LOC_Os08g03710OsAffx.2609.2.S1_x_at1/118+1753458..1754055hypothetical protein
LOC_Os08g03720NANA8+1758813..1764478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03730NANA8+1767059..1769600transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03740Os.47463.1.S1_x_at5/118+1769787..1770795transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03740Os.14491.2.S1_x_at5/118+1769787..1770795transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03750OsAffx.24317.3.S1_at5/118+1774791..1779279hypothetical protein
LOC_Os08g03750OsAffx.24317.5.S1_x_at4/118+1774791..1779279hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29017.1.S1_x_at--836--3931Chr08:1751917..1751941 (25 bp)
CGGCGGTCCTCTCGACGGTGGTGCA
LOC_Os08g03700
OsAffx.29017.1.S1_x_at--76--3371Chr08:1751894..1751918 (25 bp)
CACCGGAAGGTGACCGCCGTGACGT
LOC_Os08g03700
OsAffx.29017.1.S1_x_at--811--7371Chr08:1751876..1751900 (25 bp)
GTGACGTACAGCCTCTCCGGCTTGT
LOC_Os08g03700
OsAffx.29017.1.S1_x_at--319--5011Chr08:1751803..1751827 (25 bp)
GCAGGGACAGGGTGATCATGCAGTC
LOC_Os08g03700
OsAffx.29017.1.S1_x_at--217--2231Chr08:1751614..1751638 (25 bp)
ACAAGGGGATGGACTCCTTCTTCTT
LOC_Os08g03700
OsAffx.29017.1.S1_x_at--686--8971Chr08:1751584..1751608 (25 bp)
TGAACCCGGCGCCGTGGTACCATCT
LOC_Os08g03700
OsAffx.29017.1.S1_x_at--820--8471Chr08:1751473..1751497 (25 bp)
TGGCGAACCGCGTGCAGCGAGCGAT
LOC_Os08g03700
OsAffx.29017.1.S1_x_at--431--5811Chr08:1751444..1751468 (25 bp)
GACGCCCTCGGATTCGAGTGCACGG
LOC_Os08g03700
OsAffx.29017.1.S1_x_at--454--4191Chr08:1751440..1751464 (25 bp)
CCCTCGGATTCGAGTGCACGGCGCT
LOC_Os08g03700
OsAffx.29017.1.S1_x_at--820--8931Chr08:1751416..1751440 (25 bp)
TGACGCGCAGGGACAAGTACCGGAT
LOC_Os08g03700
OsAffx.29017.1.S1_x_at--132--2231Chr08:1751404..1751428 (25 bp)
ACAAGTACCGGATGATCGCCGGCCA
LOC_Os08g03700
Target Sequence 
CGGCGGTCCTCTCGACGGTGGTGCACCGGAAGGTGACCGCCGTGACGTACAGCCTCTCCGGCTTGTCGGAGATGATCGCG
CCGATCCCGACGGTGCGGCTGACGCGCGACCGCGGCAGGGACAGGGTGATCATGCAGTCCGTGCTCGCCGGCGGCGACCT
CGCCGTCTGCCCGGAGGGCACCACGTGCCGGGAGCCGTACCTGCTCCGGTTCAGCCCCCTGTTCGCGGAGATCGCCGGCG
AGGTCACGCCGGTGGCCGTGCGGGCCGGCGGCGCCATGTTCCACGGCACGACGGTTAGGGGGTACAAGGGGATGGACTCC
TTCTTCTTCCTCATGAACCCGGCGCCGTGGTACCATCTGCAGCTGCTCGACCCGGTGCCATCCTCTTCTGCCGCCGCCGA
CGGTGATGGCGGCGGTGACGGCGGCGGCGAGTCGAGCCGCGACGTGGCGAACCGCGTGCAGCGAGCGATCGGCGACGCCC
TCGGATTCGAGTGCACGGCGCTGACGCGCAGGGACAAGTACCGGATGATCGCCGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29017.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis