Browse Element(s) Details


Os.16607.1.S1_at

Description gb:AK063493.1
DB_XREF= gi:32973511
TID=Os.16607.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C12, full insert sequence.
FL= gb:AK063493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0369010/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03660OsAffx.22940.2.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.1.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.18.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.3.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.3.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.2.S1_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.31552.2.S1_at1/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03670Os.12605.1.S1_s_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed
LOC_Os08g03670OsAffx.16812.2.S1_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed
LOC_Os08g03676Os.52441.1.S1_at11/118+1743506..1746109glycerine-rich protein, putative, expressed
LOC_Os08g03682Os.49633.1.S1_at11/118+1746781..1749181Cytochrome P450 family protein, expressed
LOC_Os08g03682OsAffx.16813.1.S1_x_at11/118+1746781..1749181Cytochrome P450 family protein, expressed
LOC_Os08g03690Os.16607.1.S1_at10/118+1749632..1750761Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g03700OsAffx.29017.1.S1_x_at11/118+1751367..1752854Acyltransferase family protein
LOC_Os08g03710OsAffx.9194.2.S1_at11/118+1753458..1754055hypothetical protein
LOC_Os08g03710OsAffx.2609.2.S1_x_at1/118+1753458..1754055hypothetical protein
LOC_Os08g03720NANA8+1758813..1764478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03730NANA8+1767059..1769600transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03740Os.47463.1.S1_x_at5/118+1769787..1770795transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03740Os.14491.2.S1_x_at5/118+1769787..1770795transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03750OsAffx.24317.3.S1_at5/118+1774791..1779279hypothetical protein
LOC_Os08g03750OsAffx.24317.5.S1_x_at4/118+1774791..1779279hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16607.1.S1_at--295--1671Chr08:1749756..1749780 (25 bp)
AGCCTGCTGCCGTGCGTGGCGTACC
LOC_Os08g03690
Os.16607.1.S1_at--1060--3991Chr08:1749766..1749790 (25 bp)
CGTGCGTGGCGTACCTGACCGGCAA
LOC_Os08g03690
Os.16607.1.S1_at--729--7891Chr08:1749868..1749892 (25 bp)
GGTTCGCCTGCGACTGCGTGAAGAA
LOC_Os08g03690
Os.16607.1.S1_at--478--5151NONE
GCAACACCATTCCATGAGCATTCTG
NONE
Os.16607.1.S1_at--339--91Chr08:1750549..1750573 (25 bp)
ATTCCATGAGCATTCTGAACTTCTG
LOC_Os08g03690
Os.16607.1.S1_at--185--1551Chr08:1750557..1750581 (25 bp)
AGCATTCTGAACTTCTGGAGATGGA
LOC_Os08g03690
Os.16607.1.S1_at--245--3591Chr08:1750616..1750640 (25 bp)
CATTTCAAGTGAACCTGTTGCTAGT
LOC_Os08g03690
Os.16607.1.S1_at--1116--7351Chr08:1750624..1750648 (25 bp)
GTGAACCTGTTGCTAGTTTGTACAA
LOC_Os08g03690
Os.16607.1.S1_at--685--6671Chr08:1750632..1750656 (25 bp)
GTTGCTAGTTTGTACAACAAGCTGC
LOC_Os08g03690
Os.16607.1.S1_at--589--9171Chr08:1750674..1750698 (25 bp)
TGCCCCTTCTTGTTGGAGACAGTCA
LOC_Os08g03690
Os.16607.1.S1_at--68--5991Chr08:1750689..1750713 (25 bp)
GAGACAGTCATGCTTAATGTTTTTT
LOC_Os08g03690
Target Sequence 
AGCCTGCTGCCGTGCGTGGCGTACCTGACCGGCAAGGCGGCGGCGCCCTCGGGGGATTGCTGCGCCGGCGTGAGGCACCT
CCGGACGCTGCCCGTCGGCACCGCCGAGCGGCGGTTCGCCTGCGACTGCGTGAAGAAGGCGGCGGCGCGGTTCAAGGGGC
TCAACGGCGACGCCATCCGCGACCTCCCGGCCAAGTGCGCCGCGCCGCTGCCGTTCCCGCTCAGCCTCGACTTCGACTGC
AACACCATTCCATGAGCATTCTGAACTTCTGGAGATGGAGAGTTGAGACNAANNNAGCTAGAATAATGAAGATGGTTCAT
TTCAAGTGAACCTGTTGCTAGTTTGTACAACAAGCTGCATGCATGCATGCATGCCTGCCCCTTCTTGTTGGAGACAGTCA
TGCTTAATGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis