Browse Element(s) Details


Os.1044.1.S1_at

Description gb:CB682661
DB_XREF= gi:29686386
DB_XREF=OSJNEf10D18.r
CLONE=OSJNEf10D18
TID=Os.1044.1
CNT=14
FEA=mRNA
TIER=Stack
STK=6
UG=Os.1044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acetyl transferase (P0410E01.30), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4287011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42820Os.41273.1.S1_at11/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42820Os.17617.1.S1_at6/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42830Os.5871.1.S1_s_at11/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42830Os.5871.2.S1_at9/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42840OsAffx.21359.1.S1_at11/111+24706930..24707445hypothetical protein
LOC_Os01g42850Os.1041.1.S1_x_at11/111+24707484..24713535E1-like protein-activating enzyme Gsa7p/Apg7p containing protein, expressed
LOC_Os01g42860NANA1+24719919..24720137subtilisin-chymotrypsin inhibitor 2, putative, expressed
LOC_Os01g42870Os.1044.1.S1_at11/111+24721928..24723659Transferase family protein, expressed
LOC_Os01g42880Os.21615.1.S1_at11/111+24724406..24727553Transferase family protein, expressed
LOC_Os01g42890OsAffx.11447.2.S1_s_at11/111+24728454..24728888hypothetical protein
LOC_Os01g42900Os.41269.1.S1_at11/111+24735317..24737308ABC-2 type transporter family protein, expressed
LOC_Os01g42909NANA1+24742567..24743696hypothetical protein
LOC_Os01g42920NANA1+24747331..24749991retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1044.1.S1_at--662--4611Chr01:24722370..24722394 (25 bp)
GCGACCACTACGACGTGCCGCTGGA
LOC_Os01g42870
Os.1044.1.S1_at--452--7831Chr01:24722271..24722295 (25 bp)
GGTACGTGTTCACGCTCAACGACGA
LOC_Os01g42870
Os.1044.1.S1_at--521--2091Chr01:24722241..24722265 (25 bp)
ACATCGTCGCGTCGGTGATCTACCT
LOC_Os01g42870
Os.1044.1.S1_at--781--1231Chr01:24722127..24722151 (25 bp)
AGTTCGCCTAGATATACGTGCCATA
LOC_Os01g42870
Os.1044.1.S1_at--788--4434Chr10:530995..531254 (25 bp)
GCCATATTGCCATGACGATGTGTGT
NONE
Os.1044.1.S1_at--704--791Chr01:24722091..24722115 (25 bp)
ATGTGTGTAAGGATCTCATCTCATA
LOC_Os01g42870
Os.1044.1.S1_at--998--451Chr01:24722079..24722103 (25 bp)
ATCTCATCTCATATCATTTGGGTCA
LOC_Os01g42870
Os.1044.1.S1_at--280--411Chr01:24722067..24722091 (25 bp)
ATCATTTGGGTCACAAGTTCACAAC
LOC_Os01g42870
Os.1044.1.S1_at--89--4731Chr01:24722033..24722057 (25 bp)
GCTGGTTTGTGCATGTAAAATTCGA
LOC_Os01g42870
Os.1044.1.S1_at--330--91Chr01:24721997..24722021 (25 bp)
ATTCGTGACGTTTATTCGTGTCTTA
LOC_Os01g42870
Os.1044.1.S1_at--617--1891Chr01:24721967..24721991 (25 bp)
ACGTTATGTCGTAACTTTGGCGCGA
LOC_Os01g42870
Target Sequence 
GCGACCACTACGACGTGCCGCTGGACTACGGGACGGTGACGGTGTCGGACTGGANCCGCGTGGGGTTCANCGAGGTGGAC
TACGGGTTCGGCGAGCCCGGGTACGTGTTCACGCTCAACGACGACGTCAACATCGTCGCGTCGGTGATCTACCTCCGGCC
GCCGGCGCCCAAGCGCGGCATCCGCCTCATGCTCCGCTGCGTCGAGGAGCCGCACGCCGCCGCCTTCGCCGACGAGCTCG
CCAAGTTCGCCTAGATATACGTGCCATATTGCCATGACGATGTGTGTAAGGATCTCATCTCATATCATTTGGGTCACAAG
TTCACAACCCTGCTGCTGCTGGTTTGTGCATGTAAAATTCGATCANCGTTGGAATTCGTGACGTTTATTCGTGTCTTAAC
GAGACGTTATGTCGTAACTTTGGCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis