Browse Element(s) Details


Os.10464.1.S1_at

Description gb:AK071673.1
DB_XREF= gi:32981696
TID=Os.10464.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106J06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023106J06, full insert sequence.
FL= gb:AK071673.1 gb:AK058523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0523011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05190Os.47463.1.S1_x_at6/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.52305.2.S1_x_at5/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.14491.2.S1_x_at4/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190OsAffx.5780.1.A1_at3/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05200Os.46847.1.S1_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05200Os.46847.2.S1_x_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05210Os.11061.1.S1_at11/1110+2538161..2541395F-box domain containing protein, expressed
LOC_Os10g05210Os.46074.1.A1_at6/1110+2538161..2541395F-box domain containing protein, expressed
LOC_Os10g05220Os.31936.1.S1_at11/1110+2542990..2548420tRNA-guanine transglycosylases, various specificities family protein, expressed
LOC_Os10g05230Os.10464.1.S1_at11/1110+2551663..2556201Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g05240Os.10864.1.S1_at11/1110+2571520..2572815F-box domain containing protein, expressed
LOC_Os10g05250Os.21240.2.S1_at8/1110+2576663..2580782Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10464.1.S1_at--221--8091Chr10:2555311..2555335 (25 bp)
GGAGCGGAGTGAAACTTGCCCAGTT
LOC_Os10g05230
Os.10464.1.S1_at--382--8631Chr10:2555713..2555737 (25 bp)
TGGTGGATCCTCTCTTGAAGCTCAT
LOC_Os10g05230
Os.10464.1.S1_at--1098--2691Chr10:2555730..2555754 (25 bp)
AAGCTCATGCTTATTCAGTCGGTTT
LOC_Os10g05230
Os.10464.1.S1_at--610--4811Chr10:2555793..2555817 (25 bp)
GCTCTGCTCTCGACATTGGTTTGGT
LOC_Os10g05230
Os.10464.1.S1_at--548--2991Chr10:2555862..2555886 (25 bp)
AATGTTCTGGCCAACACTGTTTTGT
LOC_Os10g05230
Os.10464.1.S1_at--727--3311Chr10:2555876..2555900 (25 bp)
CACTGTTTTGTACCTTTGTTGCCAA
LOC_Os10g05230
Os.10464.1.S1_at--544--6351Chr10:2555952..2555976 (25 bp)
GATGCGATATACATACCGGTCACAT
LOC_Os10g05230
Os.10464.1.S1_at--584--6431Chr10:2555977..2556001 (25 bp)
GATCATTCAGTCATTCGGTTCAAAG
LOC_Os10g05230
Os.10464.1.S1_at--438--2451Chr10:2556112..2556136 (25 bp)
AAAATTGGTCGTAGTCTCTCAGTCT
LOC_Os10g05230
Os.10464.1.S1_at--1026--9511Chr10:2556126..2556150 (25 bp)
TCTCTCAGTCTAGGCTTCATTTGTA
LOC_Os10g05230
Os.10464.1.S1_at--152--8531Chr10:2556164..2556188 (25 bp)
TGGACAAGCTCCTGAATACATCCCT
LOC_Os10g05230
Target Sequence 
GGAGCGGAGTGAAACTTGCCCAGTTTGTGACCAGATAACCATGATAAATGCGATGTATGAATAGCCTTGGTGGCCCTGGT
GGATCCTCTCTTGAAGCTCATGCTTATTCAGTCGGTTTGGCAGAAGTCATTTGATGGGGAAGCACAATGAGCAACTGCTC
TGCTCTCGACATTGGTTTGGTCTTTTTTGGTGGAAGGAGTGAAATTAAGGAGACAAATGACATGAAATGTTCTGGCCAAC
ACTGTTTTGTACCTTTGTTGCCAATCNTTTGGCTAATTTATAGCAAGTAGCAACAGGAGGATTAGGAAAATGCTTGGATG
CGATATACATACCGGTCACATGATCATTCAGTCATTCGGTTCAAAGTCCAAACATTAAAAANNANNNNNNNNTTTGTTTA
AACTTAGGACGAATGTTACTTCACTTCTAATCCAGTTAGTGTCTGTGTATATCATACATAACATAGGTGAAAAAGAAAAA
TTGGTCGTAGTCTCTCAGTCTAGGCTTCATTTGTATAATACTTCTAGTTGGACAAGCTCCTGAATACATCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis