Browse Element(s) Details


Os.10465.1.S1_at

Description gb:AK061252.1
DB_XREF= gi:32971270
TID=Os.10465.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-G03, full insert sequence.
FL= gb:AK061252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5389011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53860Os.11437.1.S1_at11/113+30833538..30838364Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53880Os.27760.2.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53880Os.27760.1.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53890Os.10465.1.S1_at11/113+30850479..30852178expressed protein
LOC_Os03g53900Os.15989.1.S1_at11/113+30852224..30853439universal stress protein family protein, expressed
LOC_Os03g53910Os.38031.2.A1_at11/113+30854342..30857514TPR Domain containing protein, expressed
LOC_Os03g53920OsAffx.25707.1.S1_at11/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53920OsAffx.21469.1.S1_at1/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53930OsAffx.30531.1.S1_x_at2/113+30871401..30871904hypothetical protein
LOC_Os03g53939NANA3+30876526..30876679NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10465.1.S1_at--1114--991Chr03:30851094..30851118 (25 bp)
AGGTTGCCAAGACGGTATCTTTCCT
LOC_Os03g53890
Os.10465.1.S1_at--1017--5291Chr03:30851129..30851153 (25 bp)
GAAGGCTCATTCCTGCTGTTACTGA
LOC_Os03g53890
Os.10465.1.S1_at--642--211Chr03:30851735..30851759 (25 bp)
ATTTGAGCTCCTAAATGTGCGTCCC
LOC_Os03g53890
Os.10465.1.S1_at--606--2291Chr03:30851747..30851771 (25 bp)
AAATGTGCGTCCCTGTGGATTCAAG
LOC_Os03g53890
Os.10465.1.S1_at--434--7511Chr03:30851761..30851785 (25 bp)
GTGGATTCAAGCCTCAGCATTCAAA
LOC_Os03g53890
Os.10465.1.S1_at--670--8391Chr03:30851862..30851886 (25 bp)
GGCGCTACCGTTTAGCTGTTTCAAA
LOC_Os03g53890
Os.10465.1.S1_at--1144--111Chr03:30851914..30851938 (25 bp)
ATTCATGCTTTCACAGTTCCTGCAT
LOC_Os03g53890
Os.10465.1.S1_at--1151--8191Chr03:30851975..30851999 (25 bp)
GGAATCTCGGCAATGTTTTACTGAA
LOC_Os03g53890
Os.10465.1.S1_at--742--4191Chr03:30852001..30852025 (25 bp)
CCCTGAATCTGTCCGTTGTGATGTG
LOC_Os03g53890
Os.10465.1.S1_at--31--2971Chr03:30852048..30852072 (25 bp)
AATGTACCCCTTTTAGTTTCATGAT
LOC_Os03g53890
Os.10465.1.S1_at--1116--10311Chr03:30852093..30852117 (25 bp)
TTTCTTGCAATGTTCGGCCTTCGAA
LOC_Os03g53890
Target Sequence 
AGGTTGCCAAGACGGTATCTTTCCTCGCACATCCTGAAGGCTCATTCCTGCTGTTACTGACAGGGGAAGTTCAGAGGGAC
AGGGCATTTGAGCTCCTAAATGTGCGTCCCTGTGGATTCAAGCCTCAGCATTCAAACAAGCTAGGAAATGAATTCCGCTT
GTTCACAAATTATGATCCCGAAGATAGACTTGGCGGTTGGGAGCAAAATGATGGCGCTACCGTTTAGCTGTTTCAAATGT
TCAAGTCTTGATGCCTAGGGATGGATTCATGCTTTCACAGTTCCTGCATTTTTGTTTGTAGGTCACTGAAGCAATAGCAT
CAGTAGGAATCTCGGCAATGTTTTACTGAANCCCTGAATCTGTCCGTTGTGATGTGTTTGTTGGATTAAACTTTACACAA
TGTACCCCTTTTAGTTTCATGATTGTGCTTAAAGGATTTGTGGTTTCTTGCAATGTTCGGCCTTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis