Browse Element(s) Details


Os.10473.1.S1_at

Description gb:AK105768.1
DB_XREF= gi:32990977
TID=Os.10473.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E05, full insert sequence.
FL= gb:AK104003.1 gb:AK105768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2569011/11UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g257001/11UDP-glucose 6-dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25660OsAffx.19825.1.S1_x_at11/1112+14863480..14865154Cytochrome P450 family protein, expressed
LOC_Os12g25670OsAffx.31881.1.S1_at10/1112+14871873..14872340hypothetical protein
LOC_Os12g25680OsAffx.19826.1.S1_at10/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25680OsAffx.19826.2.S1_at1/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25690Os.10473.1.S1_at11/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25690Os.20425.2.S1_x_at1/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.1.S1_at11/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_x_at10/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_at7/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.10473.1.S1_at1/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25710Os.6059.1.S1_at11/1112+14894490..14902028Bifunctional aminoacyl-tRNA synthetase, putative, expressed
LOC_Os12g25720Os.54701.1.S1_at10/1112+14909584..14913966expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0003979molecular_functionUDP-glucose 6-dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10473.1.S1_at--1129--1431Chr12:14887334..14887358 (25 bp)
AGAAGCCTGCATTCGTCTTTGATGG
LOC_Os12g25690
Os.10473.1.S1_at--502--3131Chr12:14887466..14887490 (25 bp)
AATTTTCCATATTCCACACCTGAAC
LOC_Os12g25690
Os.10473.1.S1_at--1146--291Chr12:14887494..14887518 (25 bp)
ATAGCTCTCTACACTCTGCTGGTGC
LOC_Os12g25690
Os.10473.1.S1_at--124--2791Chr12:14887521..14887545 (25 bp)
AAGAGAGTCTGCGTCGAAGAGGAAT
LOC_Os12g25690
Os.10473.1.S1_at--1043--6651Chr12:14887549..14887573 (25 bp)
GTTGACCATCATTTTTTATAGCTCG
LOC_Os12g25690
Os.10473.1.S1_at--912--291Chr12:14887566..14887590 (25 bp)
ATAGCTCGTTGTTCGTCTTTACATA
LOC_Os12g25690
Os.10473.1.S1_at--195--6031Chr12:14887594..14887618 (25 bp)
GAGAGGCTACCATTTTGTCAAACAG
LOC_Os12g25690
Os.10473.1.S1_at--576--10831Chr12:14887657..14887681 (25 bp)
TTGTGTTGCACCATTGTAGATCTGA
LOC_Os12g25690
Os.10473.1.S1_at--676--2251Chr12:14887681..14887705 (25 bp)
AAATCTTCAGGCCTCTACCGTTTGA
LOC_Os12g25690
Os.10473.1.S1_at--901--1131Chr12:14887705..14887729 (25 bp)
AGTGCCACCCTCAATCTTGTATGAT
LOC_Os12g25690
Os.10473.1.S1_at--338--5672Chr12:14887730..14887754 (25 bp)
GACATGAATTCTTATAGCCGATTTA
LOC_Os12g25690
Target Sequence 
AGAAGCCTGCATTCGTCTTTGATGGGCGCAATGTGGTCGATGCCGAGAAGCTCAGGGAGATTGGGTTCATCGTCTACTCC
ATCGGCAAGCCGCTTGATGCCTGGCTCAAGGACATGCCCGCGGTTGCATAATAATTTTCCATATTCCACACCTGAACCTC
ATAGCTCTCTACACTCTGCTGGTGCTGAAGAGAGTCTGCGTCGAAGAGGAATTTGGTTGACCATCATTTTTTATAGCTCG
TTGTTCGTCTTTACATACAGGAGAGGCTACCATTTTGTCAAACAGAAAGTTGATTTCTGTTAGTATCTTTGTTCAAGTTT
TTCTTGTGTTGCACCATTGTAGATCTGAAATCTTCAGGCCTCTACCGTTTGAGTGCCACCCTCAATCTTGTATGATGACA
TGAATTCTTATAGCCGATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis