Browse Element(s) Details


Os.10495.1.S1_at

Description gb:AK061791.1
DB_XREF= gi:32971809
TID=Os.10495.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29089 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-039-F04, full insert sequence.
FL= gb:AK061791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5408011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54040OsAffx.24861.1.S1_at11/112+33096757..33097035hypothetical protein
LOC_Os02g54050OsAffx.12633.1.S1_at11/112+33101876..33102544AP2 domain containing protein, expressed
LOC_Os02g54060Os.49874.2.S1_x_at11/112+33108913..3311143420 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os02g54070OsAffx.3062.1.S1_at11/112+33112011..33117694hypothetical protein
LOC_Os02g54080Os.51632.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54080Os.10495.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54090Os.7407.1.S1_x_at11/112+33123672..33128174expressed protein
LOC_Os02g54100OsAffx.12634.1.S1_at11/112+33132223..33135903hypothetical protein
LOC_Os02g54110Os.52170.1.S1_at11/112+33141034..33148236HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10495.1.S1_at--788--5151Chr02:33119092..33119597 (25 bp)
GCAACTGCTATTGGCATCTACCAGA
LOC_Os02g54080
Os.10495.1.S1_at--127--10671Chr02:33119027..33119051 (25 bp)
TTCCTGCCGTGTAGCATCCAAGTTT
LOC_Os02g54080
Os.10495.1.S1_at--546--10311Chr02:33119005..33119029 (25 bp)
TTTCTGTGAATAGTCCATGGCTGGT
LOC_Os02g54080
Os.10495.1.S1_at--689--6531Chr02:33118796..33118820 (25 bp)
GATTTCAGCTCAGACCACATTTGTT
LOC_Os02g54080
Os.10495.1.S1_at--745--7531Chr02:33118761..33118785 (25 bp)
GGGCCTGGTCTATAGTATCTTGCAC
LOC_Os02g54080
Os.10495.1.S1_at--35--3811Chr02:33118709..33118733 (25 bp)
CTCCCTGTGTTTACCTGTATCATTT
LOC_Os02g54080
Os.10495.1.S1_at--290--6891Chr02:33118693..33118717 (25 bp)
GTATCATTTGTATCAGACCACCTCC
LOC_Os02g54080
Os.10495.1.S1_at--221--3771Chr02:33118672..33118696 (25 bp)
CTCCGGTTTGTGATTCCTTTGTACA
LOC_Os02g54080
Os.10495.1.S1_at--606--10251Chr02:33118655..33118679 (25 bp)
TTTGTACATATAAGCCCGTTCATTG
LOC_Os02g54080
Os.10495.1.S1_at--781--3111Chr02:33118628..33118652 (25 bp)
AATATATCAGCCATTCAACACTCCA
LOC_Os02g54080
Os.10495.1.S1_at--44--2551Chr02:33118559..33118583 (25 bp)
AACTCATCGATCACATGGCTTTCAC
LOC_Os02g54080
Target Sequence 
GCAACTGCTATTGGCATCTACCAGAATCCAGCAATTCTAAAAGCAGCAACTGCTGCCTTCTGGACTTCCTGCCGTGTAGC
ATCCAAGTTTCTGTGAATAGTCCATGGCTGGTCGTTGTGGTGCTGTGTACATTGTGTGACTACGGCAACGATGTTGCTTC
CCCGTGCCATCTGTCAAGGGGAAAATACTTTTGCCAAAACATTGTAGTACACTCAATTATATGATGATGTAATTCTATCG
NAGATCCTCCACCACAGGTTCACAGGTTGATTGACAGTTAGTTCATGTGTCAGGAAAGATTTCAGCTCAGACCACATTTG
TTATGAACATGTGGGCCTGGTCTATAGTATCTTGCACCTGATCTAATGGTTGGAGGACACCTCCCTCCCTGTGTTTACCT
GTATCATTTGTATCAGACCACCTCCGGTTTGTGATTCCTTTGTACATATAAGCCCGTTCATTGTAAATATATCAGCCATT
CAACACTCCAACNAGTGTATCNGTCCANTTGTAAATATGTCGATTCGTTTGAATAAACTCATCGATCACATGGCTTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis