Browse Element(s) Details


Os.10579.1.S1_at

Description gb:AK104952.1
DB_XREF= gi:32990161
TID=Os.10579.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-D12, full insert sequence.
FL= gb:AK104952.1 gb:AK069887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0270011/11Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02660Os.52238.1.S1_at2/118+1100424..1101227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g02670Os.6822.1.S1_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_s_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_at2/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02680OsAffx.28996.1.S1_at10/118+1111027..1113308hypothetical protein
LOC_Os08g02690Os.7459.1.S1_at11/118+1114784..1120093MA3 domain-containing protein, putative, expressed
LOC_Os08g02700Os.10579.1.S1_at11/118+1121539..1123208Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os08g02710OsAffx.16795.1.S1_at11/118+1125211..1129368hypothetical protein
LOC_Os08g02720OsAffx.28997.1.S1_at11/118+1131781..1133349hypothetical protein
LOC_Os08g02730Os.57407.1.S1_at11/118+1142598..1144210expressed protein
LOC_Os08g02730Os.1678.1.S1_at1/118+1142598..1144210expressed protein
LOC_Os08g02740OsAffx.28998.1.S1_at11/118+1145194..1146309hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006098biological_processpentose-phosphate shunt
GO:0004332molecular_functionfructose-bisphosphate aldolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10579.1.S1_at--1101--1811Chr08:1121985..1122009 (25 bp)
ACGCCATGAACCAGGTGGCGAGCAG
LOC_Os08g02700
Os.10579.1.S1_at--625--5171Chr08:1121958..1121982 (25 bp)
GCAAGAAGCCATGGTCGCTGACCTT
LOC_Os08g02700
Os.10579.1.S1_at--716--6991Chr08:1121744..1121768 (25 bp)
GTACTGAGGCTTTATGACGAATTGA
LOC_Os08g02700
Os.10579.1.S1_at--833--8751Chr08:1121703..1121727 (25 bp)
TGTAGTGTAACAATAAGCTGCGATT
LOC_Os08g02700
Os.10579.1.S1_at--696--2691Chr08:1121689..1121713 (25 bp)
AAGCTGCGATTGCTTCTATGCTCTC
LOC_Os08g02700
Os.10579.1.S1_at--974--10131Chr08:1121673..1121697 (25 bp)
TATGCTCTCGCAATGTCGCGTATTT
LOC_Os08g02700
Os.10579.1.S1_at--1146--4111Chr08:1121665..1121689 (25 bp)
CGCAATGTCGCGTATTTGATTTTGA
LOC_Os08g02700
Os.10579.1.S1_at--450--171Chr08:1121647..1121671 (25 bp)
ATTTTGATTTTTGCTTGGTCTTGTT
LOC_Os08g02700
Os.10579.1.S1_at--494--3611Chr08:1121634..1121658 (25 bp)
CTTGGTCTTGTTTAGCGAGTGTTTT
LOC_Os08g02700
Os.10579.1.S1_at--11--5211Chr08:1121586..1121610 (25 bp)
GAATTCAAAGTGATTTTGTCTGCTG
LOC_Os08g02700
Os.10579.1.S1_at--968--7511Chr08:1121542..1121566 (25 bp)
GTGGAGTACTACCTGATGATTCCAG
LOC_Os08g02700
Target Sequence 
ACGCCATGAACCAGGTGGCGAGCAGGGGCAAGAAGCCATGGTCGCTGACCTTCTCCTTCGGCCGCGCGCTGCAGCAGAGC
ACGCTCAAGGCGTGGGCCGGCAAGGCGGAGAACGTCGGCAAGGCGCAGGCGGCGCTGCTCGCCCGCTGCAGGGCCAACTC
CCAGGCGACGCTCGGCGCGTACGCCGGCGACGCCGCCGCCGGCGAGGGCGTCTCCGAGAACCTCCACGTCAAGGACTACA
AGTACTGAGGCTTTATGACGAATTGATATTTTTGTTTTATAATGTAGTGTAACAATAAGCTGCGATTGCTTCTATGCTCT
CGCAATGTCGCGTATTTGATTTTGATTTTTGCTTGGTCTTGTTTAGCGAGTGTTTTGTTTTGGTTCTGAATTTTGAAATG
AATTCAAAGTGATTTTGTCTGCTGTTTAACAGTGAATTAAAAAGTGGAGTACTACCTGATGATTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis