Browse Element(s) Details


Os.10606.1.S1_a_at

Description gb:AK064817.1
DB_XREF= gi:32974835
TID=Os.10606.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0007F06.9 (P0007F06.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000E14, full insert sequence.
FL= gb:AK064817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4819011/11Drought induced 19 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48160OsAffx.23708.1.S1_at10/111+27904659..27905296hypothetical protein
LOC_Os01g48170NANA1+27908996..27909977Homeobox domain containing protein
LOC_Os01g48180Os.15936.2.S1_x_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48180Os.15936.1.S1_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48190Os.10606.1.S1_a_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_x_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48200Os.26492.1.S1_at10/111+27932819..27935524glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g48210Os.32281.2.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed
LOC_Os01g48210Os.32281.3.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009785biological_processblue light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10606.1.S1_a_at--1092--4471Chr01:27930598..27930622 (25 bp)
GCCTGGGCTTCTCAACATTGGATTC
LOC_Os01g48190
Os.10606.1.S1_a_at--967--5691Chr01:27931388..27931412 (25 bp)
GACTGACTGTTCAAGTAGCCCTAGT
LOC_Os01g48190
Os.10606.1.S1_a_at--412--6971Chr01:27931402..27931426 (25 bp)
GTAGCCCTAGTTTTTCTTGCTAGAT
LOC_Os01g48190
Os.10606.1.S1_a_at--901--1311Chr01:27931503..27931527 (25 bp)
AGATGGATGTGCTTCTGGTGCCCCG
LOC_Os01g48190
Os.10606.1.S1_a_at--287--4231Chr01:27931525..27931549 (25 bp)
CCGTTGTTCTTTCGCTTCAGTAAAG
LOC_Os01g48190
Os.10606.1.S1_a_at--979--6511Chr01:27931559..27931583 (25 bp)
GATTTGGGCATGATACACACCTTAA
LOC_Os01g48190
Os.10606.1.S1_a_at--549--4311Chr01:27931578..27931602 (25 bp)
CCTTAATTTATGTCAGCTGCCCTGT
LOC_Os01g48190
Os.10606.1.S1_a_at--950--4771Chr01:27931593..27931617 (25 bp)
GCTGCCCTGTACCATTGCTTTTTAT
LOC_Os01g48190
Os.10606.1.S1_a_at--636--7691Chr01:27931626..27931650 (25 bp)
GGGTAGCCACACCTTGACTGTAACT
LOC_Os01g48190
Os.10606.1.S1_a_at--982--5711Chr01:27931641..27931665 (25 bp)
GACTGTAACTCGTTGTTGTACCTCT
LOC_Os01g48190
Os.10606.1.S1_a_at--548--8751Chr01:27931657..27931681 (25 bp)
TGTACCTCTCCATACTGTCTAGGAA
LOC_Os01g48190
Target Sequence 
GCCTGGGCTTCTCAACATTGGATTCAGAGGAACGATCAAAAGCACCAGTTCCTATTCNTGANTGATACATCAANTTCATA
AGGATACTCCTGCTCNNCCATGGGAATCAAGGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAN
AGCCACTGACAGAGCAACCTTTGTGCAAGGCCTGGTGCTCTCCACTTTATTTGAAGACTGACTGTTCAAGTAGCCCTAGT
TTTTCTTGCTAGATGCATGTTTCCTCTCGCTGGTTCCCATAAAAGCGCAATGTTCCACCNGATTTGGTGAATCTGATTTC
GTCAACAGTGAGATGGATGTGCTTCTGGTGCCCCGTTGTTCTTTCGCTTCAGTAAAGCGCGAAGTTGATTTGGGCATGAT
ACACACCTTAATTTATGTCAGCTGCCCTGTACCATTGCTTTTTATGAATTAACGGGTAGCCACACCTTGACTGTAACTCG
TTGTTGTACCTCTCCATACTGTCTAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10606.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis