Browse Element(s) Details


Os.10606.3.S1_x_at

Description gb:NM_191972.1
DB_XREF= gi:34911027
GEN=P0007F06.9
TID=Os.10606.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0007F06.9 (P0007F06.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0007F06.9 (P0007F06.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4819011/11Drought induced 19 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48160OsAffx.23708.1.S1_at10/111+27904659..27905296hypothetical protein
LOC_Os01g48170NANA1+27908996..27909977Homeobox domain containing protein
LOC_Os01g48180Os.15936.2.S1_x_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48180Os.15936.1.S1_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48190Os.10606.1.S1_a_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_x_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48200Os.26492.1.S1_at10/111+27932819..27935524glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g48210Os.32281.2.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed
LOC_Os01g48210Os.32281.3.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009785biological_processblue light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10606.3.S1_x_at--1093--2551Chr01:27930905..27930929 (25 bp)
AACTGTTCACAGTTACCTTCTTGTC
LOC_Os01g48190
Os.10606.3.S1_x_at--708--6751Chr01:27930909..27930933 (25 bp)
GTTCACAGTTACCTTCTTGTCTGAG
LOC_Os01g48190
Os.10606.3.S1_x_at--821--2131Chr01:27930913..27930937 (25 bp)
ACAGTTACCTTCTTGTCTGAGACAG
LOC_Os01g48190
Os.10606.3.S1_x_at--230--9971Chr01:27930918..27930942 (25 bp)
TACCTTCTTGTCTGAGACAGGTACT
LOC_Os01g48190
Os.10606.3.S1_x_at--1122--5651Chr01:27930933..27930957 (25 bp)
GACAGGTACTGTCAATTTTGTTACA
LOC_Os01g48190
Os.10606.3.S1_x_at--1138--3111Chr01:27930946..27931294 (25 bp)
AATTTTGTTACATATGATCGACTCA
LOC_Os01g48190
Os.10606.3.S1_x_at--292--271Chr01:27931285..27931305 (21 bp)
ATATGATCGACTCATCGCTCACGAG
LOC_Os01g48190
Os.10606.3.S1_x_at--266--9371Chr01:27931287..27931311 (25 bp)
TCGACTCATCGCTCACGAGTGAGGA
LOC_Os01g48190
Os.10606.3.S1_x_at--898--2351Chr01:27931321..27931345 (25 bp)
AAAGCGGAAACAAGCCACTGACAGA
LOC_Os01g48190
Os.10606.3.S1_x_at--593--2651Chr01:27931332..27931356 (25 bp)
AAGCCACTGACAGAGCAACCTTTGT
LOC_Os01g48190
Os.10606.3.S1_x_at--534--8951Chr01:27931339..27931363 (25 bp)
TGACAGAGCAACCTTTGTGCAAGGC
LOC_Os01g48190
Target Sequence 
AACTGTTCACAGTTACCTTCTTGTCTGAGACAGGTACTGTCAATTTTGTTACATATGATCGACTCATCGCTCACGAGTGA
GGAAAGGGAACAAAAGCGGAAACAAGCCACTGACAGAGCAACCTTTGTGCAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10606.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis