Browse Element(s) Details


Os.10664.1.S1_at

Description gb:AK121224.1
DB_XREF= gi:37990847
TID=Os.10664.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.10664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090N19, full insert sequence.
FL= gb:AK121224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2559011/11Brain protein 44, putative, expressed
LOC_Os07g267001/11Brain protein 44, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25570Os.15998.1.S1_at11/118+15421296..15426307histone deacetylase, putative, expressed
LOC_Os08g25580OsAffx.22940.3.S1_at11/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.2.S1_s_at10/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.3.S1_x_at8/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.5.S1_x_at6/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.1.S1_s_at6/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580Os.35344.18.S1_x_at3/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580Os.35344.3.S1_x_at3/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.31552.2.S1_at1/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25590Os.10664.1.S1_at11/118+15438318..15441706Brain protein 44, putative, expressed
LOC_Os08g25600OsAffx.29347.1.S1_at11/118+15442831..15445641hypothetical protein
LOC_Os08g25610NANA8+15454550..15456517transposon protein, putative, Mariner sub-class
LOC_Os08g25624OsAffx.29348.1.S1_s_at11/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25624Os.18089.1.S1_at10/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os08g25624OsAffx.29348.1.S1_at10/118+15459416..15466254Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10664.1.S1_at--633--9072Chr08:15440868..15440892 (25 bp)
TGCTTGCACTGGAGTCATTTGGTCA
LOC_Os08g25590
Os.10664.1.S1_at--1009--6751Chr08:15441115..15441139 (25 bp)
GTTAACGTTGCAATGGCCGGCACAG
LOC_Os08g25590
Os.10664.1.S1_at--700--8951Chr08:15441316..15441340 (25 bp)
TGACATGATGAAAACCCGGCCCACA
LOC_Os08g25590
Os.10664.1.S1_at--351--5891Chr08:15441347..15441371 (25 bp)
GAGCGATACTCAACTCACTCTGAAT
LOC_Os08g25590
Os.10664.1.S1_at--242--9051Chr08:15441372..15441396 (25 bp)
TGCAGAGACGCGTCGTTTTCTCCAA
LOC_Os08g25590
Os.10664.1.S1_at--1022--2111Chr08:15441398..15441422 (25 bp)
ACAGGAACCTGTCGTTTGTTTCTAT
LOC_Os08g25590
Os.10664.1.S1_at--1086--8771Chr08:15441414..15441438 (25 bp)
TGTTTCTATGTTTCTCTTGCACCAA
LOC_Os08g25590
Os.10664.1.S1_at--918--2831Chr08:15441528..15441552 (25 bp)
AAGTAGTCTCTCCTTTATGTTTCTC
LOC_Os08g25590
Os.10664.1.S1_at--726--6831Chr08:15441546..15441570 (25 bp)
GTTTCTCCGTTGTTTATTCACATGT
LOC_Os08g25590
Os.10664.1.S1_at--693--3191Chr08:15441596..15441620 (25 bp)
CAATCTTTCTGTTTGCTATCTGAAG
LOC_Os08g25590
Os.10664.1.S1_at--315--8491Chr08:15441637..15441661 (25 bp)
TGGCTTTCAGCTTTCAGATTACCGT
LOC_Os08g25590
Target Sequence 
TGCTTGCACTGGAGTCATTTGGTCACGCTACAGTATGGTTATAACACCAAAAAACTGGAATCTATTCAGTGTTAACGTTG
CAATGGCCGGCACAGGCTTGTATCAGCTTTCCCGTAAAATAAGGAAAGATTACTTTTCTGATCAGAAGGATGATGTTGCA
TCATTGGAAGGATAATGATGACTGACATGATGAAAACCCGGCCCACAACCTTTGAGCGATACTCAACTCACTCTGAATTG
CAGAGACGCGTCGTTTTCTCCAAGACAGGAACCTGTCGTTTGTTTCTATGTTTCTCTTGCACCAATTTATGGATCGATCT
GGAATGTTACATCCCAAAAAAAAAAATCAAATAATCTTTTTGACAATCTNTGCGAATAAATGTGCAAATACATCAAGTAG
TCTCTCCTTTATGTTTCTCCGTTGTTTATTCACATGTTTTGCTAAGAAGCTGTTACAGCGAACAATCTTTCTGTTTGCTA
TCTGAAGTTACTACATTGTAACCTGGCTTTCAGCTTTCAGATTACCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis