Browse Element(s) Details


Os.10665.1.S1_at

Description gb:AK105865.1
DB_XREF= gi:32991074
TID=Os.10665.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A06, full insert sequence.
FL= gb:AK058389.1 gb:AK105865.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0555011/11sialyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05510OsAffx.19506.1.S1_at11/1112+2520695..2522452expressed protein
LOC_Os12g05520NANA12+2526840..2530920retrotransposon protein, putative, unclassified
LOC_Os12g05529NANA12+2531932..2532622hypothetical protein
LOC_Os12g05540Os.13516.1.S1_at11/1112+2534929..2537877Ser/Thr protein phosphatase family protein, expressed
LOC_Os12g05540OsAffx.9512.1.S1_x_at1/1112+2534929..2537877Ser/Thr protein phosphatase family protein, expressed
LOC_Os12g05550Os.10665.1.S1_at11/1112+2545330..2546900sialyltransferase, putative, expressed
LOC_Os12g05560OsAffx.7491.1.S1_x_at11/1112+2550195..2550440hypothetical protein
LOC_Os12g05570Os.46012.2.S1_x_at5/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.27088.1.A1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.46012.3.S1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05580OsAffx.7492.1.S1_at11/1112+2561789..2562382expressed protein
LOC_Os12g05590Os.57548.1.S1_at11/1112+2564215..2565564CENTRORADIALIS, putative, expressed
LOC_Os12g05600Os.52940.1.S1_at11/1112+2570685..2572881hydrolase, alpha/beta fold family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0008373molecular_functionsialyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10665.1.S1_at--145--2031Chr12:2546325..2546349 (25 bp)
ACTACTCGCTGAGGCGGTTCGTCTC
LOC_Os12g05550
Os.10665.1.S1_at--596--5771Chr12:2546390..2546414 (25 bp)
GACGAGAGGTACTTCCACTACTCGT
LOC_Os12g05550
Os.10665.1.S1_at--486--4651Chr12:2546445..2546469 (25 bp)
GCGTCTGCGACGAGGTGAGCCTCTT
LOC_Os12g05550
Os.10665.1.S1_at--313--4331Chr12:2546500..2546524 (25 bp)
CCATTACCACACCAACCAGAAGAAG
LOC_Os12g05550
Os.10665.1.S1_at--502--4191Chr12:2546660..2546684 (25 bp)
CCCCGACGTGGGTGTATGTGTAGCT
LOC_Os12g05550
Os.10665.1.S1_at--487--7431Chr12:2546671..2546695 (25 bp)
GTGTATGTGTAGCTGCTGCTGAATT
LOC_Os12g05550
Os.10665.1.S1_at--1143--2551Chr12:2546711..2546735 (25 bp)
AACTGATTTCATATTCGATACGTAG
LOC_Os12g05550
Os.10665.1.S1_at--439--4031Chr12:2546726..2546750 (25 bp)
CGATACGTAGAATCCCATTGTAATT
LOC_Os12g05550
Os.10665.1.S1_at--1146--6251Chr12:2546788..2546812 (25 bp)
GATGTGTGTCAGATTTGGGAGCTTT
LOC_Os12g05550
Os.10665.1.S1_at--408--7351Chr12:2546841..2546865 (25 bp)
GTGAATTTATTCGAACCATTGCAGT
LOC_Os12g05550
Os.10665.1.S1_at--497--8811Chr12:2546871..2546895 (25 bp)
TGTTGATCATGGAAGCGCTTATTGA
LOC_Os12g05550
Target Sequence 
ACTACTCGCTGAGGCGGTTCGTCTCCGCCACCGGCGAGCCGGCGGCGAACTGGACGCGGAGGCACGACGAGAGGTACTTC
CACTACTCGTCGGGGATGCAGGCGGTGGTGATGGCGCTCGGCGTCTGCGACGAGGTGAGCCTCTTCGGCTTCGGCAAGTC
GCCCGGCGCCAAGCACCATTACCACACCAACCAGAAGAAGGAGCTGGACCTGCACGACTACGAGGCGGAGTACGACTTCT
ACGGCGACCTCCAGGCGCGGCCGGCGGCGGTGCCCTTCCTCGACGACGCCCACGGCTTCACCGTGCCGCCGGTGAGGTTG
CACTGGTGACGGTGACCCCGACGTGGGTGTATGTGTAGCTGCTGCTGAATTTTGTTGTAAAATTGAAACTGATTTCATAT
TCGATACGTAGAATCCCATTGTAATTTGTAAATCAGGGGGAATGGGAGGAGATACGGACACAAGATGTGTGTCAGATTTG
GGAGCTTTGTAAGGAGAAATGTAGCTCAATTTTGTTGTGAATTTATTCGAACCATTGCAGTGAACTTGTTGATCATGGAA
GCGCTTATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis