Browse Element(s) Details


Os.10677.2.S1_at

Description gb:CB643846
DB_XREF= gi:29638837
DB_XREF=OSJNEb04M07.f
CLONE=OSJNEb04M07
TID=Os.10677.2
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10677 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_568313.1 (A.thaliana) ubiquitin-fusion degradation protein-like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3140011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31360Os.8013.1.S1_at11/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360Os.12807.2.S1_x_at2/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360OsAffx.27508.71.S1_s_at1/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31370OsAffx.25317.1.S1_at10/113+17827085..17828044hypothetical protein
LOC_Os03g31370OsAffx.26847.1.S1_x_at1/113+17827085..17828044hypothetical protein
LOC_Os03g31380OsAffx.13141.1.S1_at9/113+17832791..17835173hypothetical protein
LOC_Os03g31390OsAffx.25318.1.S1_at11/113+17837820..17838547hypothetical protein
LOC_Os03g31400Os.10677.2.S1_at11/113+17839850..17846915U-box domain containing protein, expressed
LOC_Os03g31400Os.10677.1.A1_at11/113+17839850..17846915U-box domain containing protein, expressed
LOC_Os03g31410Os.51453.1.S1_x_at6/113+17848145..17848436hypothetical protein
LOC_Os03g31430Os.54400.1.S1_at10/113+17857604..17867420Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os03g31440OsAffx.25320.1.S1_at10/113+17869807..17871282hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10677.2.S1_at--675--591Chr03:17843752..17843776 (25 bp)
ATGCCTTTGCCATCACAATGTCCAA
LOC_Os03g31400
Os.10677.2.S1_at--34--4951Chr03:17843789..17843813 (25 bp)
GCATTCCAGAGCATTTCCTCGATGA
LOC_Os03g31400
Os.10677.2.S1_at--21--1571Chr03:17843863..17843997 (25 bp)
AGCTTTGCGTTGGATGACTTTCTCA
LOC_Os03g31400
Os.10677.2.S1_at--1120--3551Chr03:17844002..17844026 (25 bp)
CATCATTATGTTCATGGCGGGCACT
LOC_Os03g31400
Os.10677.2.S1_at--806--8351Chr03:17844017..17844041 (25 bp)
GGCGGGCACTTCATACATTAAAAAT
LOC_Os03g31400
Os.10677.2.S1_at--610--7471Chr03:17844187..17844211 (25 bp)
GTGGGTTGAGTTCTACAGCCTCATT
LOC_Os03g31400
Os.10677.2.S1_at--551--3251Chr03:17844225..17844249 (25 bp)
CAACTATGTCTCGATTACCTGGTCA
LOC_Os03g31400
Os.10677.2.S1_at--143--7951Chr03:17844272..17844296 (25 bp)
GGATATTGAATTCACTGGTTCCCAT
LOC_Os03g31400
Os.10677.2.S1_at--30--3911Chr03:17844286..17844410 (25 bp)
CTGGTTCCCATACACAATTCTTTGA
LOC_Os03g31400
Os.10677.2.S1_at--494--71Chr03:17844433..17844457 (25 bp)
ATTGCTGAGCTTCTAGAGTATCTAT
LOC_Os03g31400
Os.10677.2.S1_at--759--771Chr03:17844461..17844485 (25 bp)
ATGTCCCCAGTCATCGGAATGCATG
LOC_Os03g31400
Target Sequence 
ATGCCTTTGCCATCACAATGTCCAAAGGAATTTGCTTGCATTCCAGAGCATTTCCTCGATGATGCAATGGATTTACTAGT
TCTAACCTCTAGAATTCCAAAAGCTTTGGAAAGCTTTGCGTTGGATGACTTTCTCAACTTCATCATTATGTTCATGGCGG
GCACTTCATACATTAAAAATCCTTACCTTAGAGCAAAGATGGTTGAAGTTTTGAATTGCTGGATGCCACAAAGAAGTGGG
TTGAGTTCTACAGCCTCATTATTTGAGGNGCACCAACTATGTCTCGATTACCTGGTCAAAAATCTTCTAAAGCTTTATGT
GGATATTGAATTCACTGGTTCCCATACACAATTCTTTGACAAGTTTAACATTCGACATAATATTGCTGAGCTTCTAGAGT
ATCTATGGGATGTCCCCAGTCATCGGAATGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10677.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis