Browse Element(s) Details


Os.10689.1.S1_at

Description gb:AK069429.1
DB_XREF= gi:32979453
TID=Os.10689.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0514G12.37 (P0514G12.37), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020M04, full insert sequence.
FL= gb:AK069429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0201911/11Cytochrome P450 88A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01980Os.4407.1.S1_at11/116+549954..554812Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01980Os.4407.2.S1_at10/116+549954..554812Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01990Os.44850.1.S1_at11/116+554637..555548HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os06g02000Os.52419.1.S1_at11/116+563535..566659Uridylate kinase, putative, expressed
LOC_Os06g02010NANA6+572964..573323hypothetical protein
LOC_Os06g02019Os.10689.1.S1_at11/116+579671..585449Cytochrome P450 88A1, putative, expressed
LOC_Os06g02028OsAffx.4692.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028Os.12721.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028OsAffx.4692.1.S1_x_at10/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02040Os.31022.1.S1_at11/116+592578..593131Late embryogenesis abundant group 1 family protein, expressed
LOC_Os06g02054OsAffx.10373.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.10373.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02070OsAffx.10371.1.S1_at11/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02070OsAffx.20604.2.S1_at2/116+605084..606675retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10689.1.S1_at--917--5011Chr06:585026..585050 (25 bp)
GCAGGGTGAGATATCTGCCTCATCC
LOC_Os06g02019
Os.10689.1.S1_at--882--8651Chr06:585057..585081 (25 bp)
TGTGGACAACTGCTTGGCGACGATC
LOC_Os06g02019
Os.10689.1.S1_at--789--8351Chr06:585072..585096 (25 bp)
GGCGACGATCACCAAAGTTTCCGAT
LOC_Os06g02019
Os.10689.1.S1_at--675--6571Chr06:585115..585139 (25 bp)
GATTCTTTAGCTGGAACCGAAAACA
LOC_Os06g02019
Os.10689.1.S1_at--269--2411Chr06:585135..585159 (25 bp)
AAACAGCCAGGCTAGGCTACTTGTT
LOC_Os06g02019
Os.10689.1.S1_at--821--7431Chr06:585236..585260 (25 bp)
GTGTATTCGTCTTGATATGCTCGCT
LOC_Os06g02019
Os.10689.1.S1_at--597--8831Chr06:585248..585272 (25 bp)
TGATATGCTCGCTTTGGTTTCGCAT
LOC_Os06g02019
Os.10689.1.S1_at--49--8591Chr06:585262..585286 (25 bp)
TGGTTTCGCATTGTTCTTGTTTGTC
LOC_Os06g02019
Os.10689.1.S1_at--347--6071Chr06:585321..585345 (25 bp)
GAGTTATACTAACAAGCTTCCTGAA
LOC_Os06g02019
Os.10689.1.S1_at--892--8631Chr06:585348..585372 (25 bp)
TGGGAAACACGCAAGCATTCCCCTT
LOC_Os06g02019
Os.10689.1.S1_at--767--3691Chr06:585378..585402 (25 bp)
CTATCTATCCACCTCACTGAATTTG
LOC_Os06g02019
Target Sequence 
GCAGGGTGAGATATCTGCCTCATCCCCGGCCTGTGGACAACTGCTTGGCGACGATCACCAAAGTTTCCGATGAACACTAA
AAGTTCAGGGATTCTTTAGCTGGAACCGAAAACAGCCAGGCTAGGCTACTTGTTCCTCTGGGACAAGTAAATAAACATGA
TTATAAAGTATATCACGTACTCTGGAAGAAAAAAAAGAGAGAGAAGTGATGTGTATTCGTCTTGATATGCTCGCTTTGGT
TTCGCATTGTTCTTGTTTGTCCTAGCTTAGGACAAAGATTAAAGTAAAGCAGTTCGAGTTATACTAACAAGCTTCCTGAA
TATGGGAAACACGCAAGCATTCCCCTTCTTTTCTATCTATCCACCTCACTGAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis