Browse Element(s) Details


Os.1070.1.S1_at

Description gb:CB621536
DB_XREF= gi:29616524
DB_XREF=OSIIEa07H16.r
CLONE=OSIIEa07H16
TID=Os.1070.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.1070 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative leucyl-tRNA synthetase (P0698A04.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0302011/11Leucyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02980OsAffx.10886.1.S1_at11/111+1117121..1123551hypothetical protein
LOC_Os01g02980OsAffx.10886.2.S1_at9/111+1117121..1123551hypothetical protein
LOC_Os01g02990OsAffx.22815.2.S1_at11/111+1134043..1134426hypothetical protein
LOC_Os01g02999NANA1+1135682..1136375NA
LOC_Os01g03010OsAffx.10819.1.S1_at10/111+1140359..1141299hypothetical protein
LOC_Os01g03020Os.1070.1.S1_at11/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03020OsAffx.30685.1.S1_x_at1/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03030Os.38065.1.S1_at11/111+1152052..1155249alanyl-tRNA synthetase, putative, expressed
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1070.1.S1_at--983--10211Chr01:1143354..1143378 (25 bp)
TATTCTGTTGCTTTCGCCTTTTGCA
LOC_Os01g03020
Os.1070.1.S1_at--604--3671Chr01:1143337..1143361 (25 bp)
CTTTTGCACCACACATGGCTGAGGA
LOC_Os01g03020
Os.1070.1.S1_at--620--5891Chr01:1143314..1143338 (25 bp)
GAGCTTTGGTTTCGCCTTGGGAACT
LOC_Os01g03020
Os.1070.1.S1_at--1044--7571Chr01:1143296..1143320 (25 bp)
GGGAACTCAAGATCATTGGCCCACG
LOC_Os01g03020
Os.1070.1.S1_at--166--10871Chr01:1143281..1143305 (25 bp)
TTGGCCCACGAGCAATTTCCAGAGG
LOC_Os01g03020
Os.1070.1.S1_at--849--2351Chr01:1143072..1143096 (25 bp)
AAAGCTCGTGCTTCCAGTGCAAATC
LOC_Os01g03020
Os.1070.1.S1_at--1114--631Chr01:1142995..1143019 (25 bp)
ATGCATTCCAAATAGCAGCCTCCGA
LOC_Os01g03020
Os.1070.1.S1_at--93--8111Chr01:1142871..1142895 (25 bp)
GGACCTGATTATCGATCCAGCGTTG
LOC_Os01g03020
Os.1070.1.S1_at--919--1631Chr01:1142853..1142877 (25 bp)
AGCGTTGCCATCGATCTTCGTTGAA
LOC_Os01g03020
Os.1070.1.S1_at--857--431Chr01:1142840..1142864 (25 bp)
ATCTTCGTTGAAGGCCTGGCTGAGT
LOC_Os01g03020
Os.1070.1.S1_at--355--8271Chr01:1142747..1142771 (25 bp)
GGCATGCAACTTTTGTGATACTACT
LOC_Os01g03020
Target Sequence 
TATTCTGTTGCTTTCGCCTTTTGCACCACACATGGCTGAGGAGCTTTGGTTTCGCCTTGGGAACTCAAGATCATTGGCCC
ACGAGCAATTTCCAGAGGGAAAAAGTGAGTACTTGAAAGAATCAAAGCTCGTGCTTCCAGTGCAAATCAATGGGAAGACC
AGGGGTACAATTCTTGTCGACAAAGAGTGCTCTGAGGATGATGCATTCCAAATAGCAGCCTCCGACGAGAAACTCTCCAA
ATATTTGACTGGGAAGGGCATCAGGAAGAGAATTTATGTGCCTGGAAGGATTCTTAATGTTATACCTAGATAAACAGAAG
GCAAGGACCTGATTATCGATCCAGCGTTGCCATCGATCTTCGTTGAAGGCCTGGCTGAGTAGTTGTAGGTATTATTGAGA
CATTAGAAATGTGTAAATTTCCATTCTTTTGTAGCATTTGTAGTTGTTGGCATGCAACTTTTGTGATACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis