Browse Element(s) Details


Os.10708.1.S1_at

Description gb:AF513382.1
DB_XREF= gi:31324092
TID=Os.10708.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10708 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) histone deacetylase HDAC1 mRNA, complete cds; alternatively spliced.
PROD=histone deacetylase HDAC1
FL= gb:AF513382.1 gb:AK068682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3847011/11histone deacetylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38440OsAffx.5045.1.S1_at11/116+22776169..22777114hypothetical protein
LOC_Os06g38450Os.35456.1.S1_at11/116+22778412..22780112Papain family cysteine protease containing protein, expressed
LOC_Os06g38460OsAffx.15821.2.S1_at11/116+22790491..22790871hypothetical protein
LOC_Os06g38470Os.10708.2.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_a_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.28463.1.S1_x_at1/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38480Os.54381.1.S1_at11/116+22806541..22808931retrotransposon protein, putative, unclassified, expressed
LOC_Os06g38490OsAffx.15822.1.S1_at11/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38490Os.54901.1.S1_at1/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38500NANA6+22816834..22817166hypothetical protein
LOC_Os06g38510Os.18224.1.S1_at11/116+22820120..22822391Pectate lyase precursor, putative, expressed
LOC_Os06g38520OsAffx.27990.1.S1_at11/116+22823679..22825322Pectate lyase family protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009861biological_processjasmonic acid and ethylene-dependent systemic resistance
GO:0016441biological_processposttranscriptional gene silencing
GO:0016575biological_processhistone deacetylation
GO:0005634cellular_componentnucleus
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10708.1.S1_at--331--271Chr06:22794123..22794147 (25 bp)
ATAGGGTCGCTGCAGAGAACACCAA
LOC_Os06g38470
Os.10708.1.S1_at--1005--3211Chr06:22794101..22794125 (25 bp)
CAAGGGCACAGAACCTGCGGCTGAT
LOC_Os06g38470
Os.10708.1.S1_at--898--6231Chr06:22794079..22794103 (25 bp)
GATGGAGTTGGTTCCTCGAAACAAA
LOC_Os06g38470
Os.10708.1.S1_at--147--8811Chr06:22793926..22793946 (21 bp)
TGTTCCTACCGATGCAAGTGCGATG
LOC_Os06g38470
Os.10708.1.S1_at--250--5431Chr06:22793892..22793916 (25 bp)
GAACCAGGCTCCCTGAAAGTCGAGC
LOC_Os06g38470
Os.10708.1.S1_at--343--2811Chr06:22793846..22793870 (25 bp)
AAGATCAACCATCGGTGCACCAGAA
LOC_Os06g38470
Os.10708.1.S1_at--541--5671Chr06:22793821..22793845 (25 bp)
GACATAATAGTTCTCTCTACCTTAA
LOC_Os06g38470
Os.10708.1.S1_at--632--7051Chr06:22793790..22793814 (25 bp)
GTAACTGATGCCATCTATCATCCAT
LOC_Os06g38470
Os.10708.1.S1_at--198--8051Chr06:22793755..22793779 (25 bp)
GGAGAAACTCCCAACTTTGAAGCAG
LOC_Os06g38470
Os.10708.1.S1_at--106--1531Chr06:22793735..22793759 (25 bp)
AGCAGAGAGTTCATGCCATACCAAA
LOC_Os06g38470
Os.10708.1.S1_at--981--8551Chr06:22793689..22793713 (25 bp)
TGGTATGTACACCTTTCGAACTGGT
LOC_Os06g38470
Target Sequence 
ATAGGGTCGCTGCAGAGAACACCAAGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTCCTACC
GATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTCGAGCCAGATAACTCAAACAAATTGCAAGATCAACC
ATCGGTGCACCAGAAGACATAATAGTTCTCTCTACCTTAAAACTTAGTAACTGATGCCATCTATCATCCATTGATTATAT
TGGAGAAACTCCCAACTTTGAAGCAGAGAGTTCATGCCATACCAAAAGTTATATACCAAATTTCGAATGGTATGTACACC
TTTCGAACTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis