Browse Element(s) Details


Os.10786.1.S1_at

Description gb:AK065099.1
DB_XREF= gi:32975117
TID=Os.10786.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001M21, full insert sequence.
FL= gb:AK103000.1 gb:AK073276.1 gb:AK065099.1 gb:AK067814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3155011/11Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31530NANA3+17914440..17918701retrotransposon protein, putative, unclassified
LOC_Os03g31540OsAffx.25325.1.S1_at11/113+17922231..17923432hypothetical protein
LOC_Os03g31540OsAffx.5106.1.S1_at2/113+17922231..17923432hypothetical protein
LOC_Os03g31542Os.54774.1.S1_x_at2/113+17926746..17930362retrotransposon, putative, centromere-specific
LOC_Os03g31542Os.52447.1.S1_x_at1/113+17926746..17930362retrotransposon, putative, centromere-specific
LOC_Os03g31542Os.54774.1.S1_at1/113+17926746..17930362retrotransposon, putative, centromere-specific
LOC_Os03g31544OsAffx.25326.1.S1_at11/113+17931757..17932080hypothetical protein
LOC_Os03g31546NANA3+17938060..17938731hypothetical protein
LOC_Os03g31550Os.10786.1.S1_at11/113+17940519..17953383Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain containing protein, expressed
LOC_Os03g31560OsAffx.18078.1.S1_at4/113+17959358..17966409hypothetical protein
LOC_Os03g31560Os.49923.1.S1_at3/113+17959358..17966409hypothetical protein
LOC_Os03g31570Os.7167.1.S1_at11/113+17971044..17975559proline-rich family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009688biological_processabscisic acid biosynthesis
GO:0009851biological_processauxin biosynthesis
GO:0004031molecular_functionaldehyde oxidase activity
GO:0004854molecular_functionxanthine dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10786.1.S1_at--41--3211Chr03:17952052..17952071 (20 bp)
CAAGGTCTCACTTTTGAAGGGCGTT
LOC_Os03g31550
Os.10786.1.S1_at--411--9671Chr03:17952868..17952892 (25 bp)
TCAGCCGTCTTGTTTGCCATAAAGG
LOC_Os03g31550
Os.10786.1.S1_at--680--6171Chr03:17952916..17952940 (25 bp)
GAGGAGGGTCACTTCGACTGGTTCC
LOC_Os03g31550
Os.10786.1.S1_at--772--851Chr03:17952976..17953000 (25 bp)
ATGGCATGCGTGGATTCCATCACAA
LOC_Os03g31550
Os.10786.1.S1_at--1136--10711Chr03:17953007..17953031 (25 bp)
TTGCTAGCGTATATTACCGTCCCAA
LOC_Os03g31550
Os.10786.1.S1_at--446--2871Chr03:17953074..17953098 (25 bp)
AAGGTTTATGCTTGTCGTACGTATA
LOC_Os03g31550
Os.10786.1.S1_at--177--6891Chr03:17953094..17953118 (25 bp)
GTATATTTGTACAGTCCCAAGCTAC
LOC_Os03g31550
Os.10786.1.S1_at--563--5191Chr03:17953214..17953238 (25 bp)
GCAATGTTCACATCGACTTGCTGTC
LOC_Os03g31550
Os.10786.1.S1_at--469--5211Chr03:17953252..17953276 (25 bp)
GAATAGAAGTGCAGGGCTCAGCCCA
LOC_Os03g31550
Os.10786.1.S1_at--46--2971Chr03:17953276..17953300 (25 bp)
AATGGCGTGTTCTCAGATGCTGTCT
LOC_Os03g31550
Os.10786.1.S1_at--789--4731Chr03:17953294..17953318 (25 bp)
GCTGTCTACTCCCTGTGTTTAAAAC
LOC_Os03g31550
Target Sequence 
CAAGGTCTCACTTTTGAAGGGCGTTTNGAATCCAAAGGTCATTCACTCATCCAAGGCTGTAGGAGAGCCACCGTTTTTCC
TCGGTTCAGCCGTCTTGTTTGCCATAAAGGATGCGATATCTGCCGCAAGAGCTGAGGAGGGTCACTTCGACTGGTTCCCA
CTCGACAGCCCAGCAACACCGGAAAGAATAAGAATGGCATGCGTGGATTCCATCACAAAGAAATTTGCTAGCGTATATTA
CCGTCCCAANCTTAGTGTATAGTGGCTACTGCCAAAGTACAAGGGTCATTAAAGGTTTATGCTTGTCGTACGTATATTTG
TACAGTCCCAAGCTACTGTGTAAACATAAATATAGGCGACAGTTTAGGGGATAAAAANTTACCTTTTCCTCTTCTTTTTT
ACCCCCCAGGAAGAAAACACTAGAAATAAAAGCAATGTTCACATCGACTTGCTGTCNAGCTGTGTACTGGAATAGAAGTG
CAGGGCTCAGCCCAATGGCGTGTTCTCAGATGCTGTCTACTCCCTGTGTTTAAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis