Browse Element(s) Details


Os.10824.1.S1_at

Description gb:AK065040.1
DB_XREF= gi:32975058
TID=Os.10824.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001H17, full insert sequence.
FL= gb:AK065040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g502209/11Peroxisomal membrane anchor protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50180Os.8889.1.S1_at11/115+28674633..28675422EF hand family protein, expressed
LOC_Os05g50190Os.22907.1.S1_at11/115+28676892..28680600protein kinase, putative, expressed
LOC_Os05g50200Os.17968.1.S1_at11/115+28683779..28690832expressed protein
LOC_Os05g50210Os.36199.1.S1_at11/115+28691695..28696569expressed protein
LOC_Os05g50220Os.10824.1.S1_at9/115+28696786..28699536Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g50230Os.55617.1.S1_at11/115+28703662..28704897expressed protein
LOC_Os05g50240Os.6266.1.S1_s_at11/115+28707649..28708433hypothetical protein
LOC_Os05g50250Os.51338.1.S1_at11/115+28712194..28717965NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os05g50260OsAffx.15177.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260Os.8509.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260OsAffx.15177.1.S1_x_at11/115+28718592..28721019Polygalacturonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006625biological_processprotein targeting to peroxisome
GO:0007031biological_processperoxisome organization and biogenesis
GO:0005777cellular_componentperoxisome
GO:0005829cellular_componentcytosol
GO:0005515molecular_functionprotein binding
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10824.1.S1_at--177--3211Chr05:28699007..28699031 (25 bp)
CAATGGACACCATCGAATCGAGATC
LOC_Os05g50220
Os.10824.1.S1_at--339--2251Chr05:28699034..28699058 (25 bp)
AAATTCAACTTGACAGCGCCAACCA
LOC_Os05g50220
Os.10824.1.S1_at--23--5651Chr05:28699045..28699069 (25 bp)
GACAGCGCCAACCAATTTACTGAAA
LOC_Os05g50220
Os.10824.1.S1_at--349--7631Chr05:28699091..28699115 (25 bp)
GGGACTCACTATTGCTGGAAGAAAC
LOC_Os05g50220
Os.10824.1.S1_at--552--6291Chr05:28699141..28699165 (25 bp)
GATGATGCTGCCTCGACAAAGTCGT
LOC_Os05g50220
Os.10824.1.S1_at--34--2251Chr05:28699265..28699289 (25 bp)
AAATTCTCTGAACCTGCTTTCTCTG
LOC_Os05g50220
Os.10824.1.S1_at--1139--10571Chr05:28699283..28699307 (25 bp)
TTCTCTGAGCTCACTGATCTGCGTA
LOC_Os05g50220
Os.10824.1.S1_at--322--471Chr05:28699299..28699323 (25 bp)
ATCTGCGTACTTCCCTATTGTTGGA
LOC_Os05g50220
Os.10824.1.S1_at--1014--2751Chr05:28699344..28699368 (25 bp)
AAGACCTCCCAATTTTCGTTAGCTG
LOC_Os05g50220
Os.10824.1.S1_at--288--5691NONE
GACTTGTGAGGCTCATGTCATGTTT
NONE
Os.10824.1.S1_at--788--8971NONE
TGAACCCTTGCATTTGTAACAGACA
NONE
Target Sequence 
CAATGGACACCATCGAATCGAGATCAGAAATTCAACTTGACAGCGCCAACCAATTTACTGAAACGGAGAATAGATCAAAT
CAAGGGGACTCACTATTGCTGGAAGAAACGGTTGCAGGTTNTGNAGCTCACACAGATGATGCTGCCTCGACAAAGTCGTA
AATGCAAAAGCNCGTGATGATGGAATTGAACATGCTGGGAAACTATTTCAACATATACTTAGCCAAAAAGCTCGAATTTN
TAGTGCAACAGTTTTCTGAAATTCTCTGAACCTGCTTTCTCTGAGCTCACTGATCTGCGTACTTCCCTATTGTTGGAATC
AGATTTAGCAGGCACAAAAGACCTCCCAATTTTCGTTAGCTGGAACAGTTATACAATCTGTATAATGTAATCATGAAAAA
TATACAAACAACAACATGAAATGTTGTGACTTGTGAGGCTCATGTCATGTTTGAAGTTTGAACCCTTGCATTTGTAACAG
ACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis