Browse Element(s) Details


Os.10858.1.S1_at

Description gb:AK105420.1
DB_XREF= gi:32990629
TID=Os.10858.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-B07, full insert sequence.
FL= gb:AK073737.1 gb:AK105420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3727011/11pollen-specific kinase partner protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37240OsAffx.6503.1.S1_at11/119+21496134..21514635Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os09g37250OsAffx.6504.1.S1_at10/119+21515372..21517140ARID/BRIGHT DNA binding domain containing protein
LOC_Os09g37260OsAffx.18025.1.S1_at11/119+21523888..21525085hypothetical protein
LOC_Os09g37270Os.10858.1.S1_at11/119+21525495..21529378pollen-specific kinase partner protein, putative, expressed
LOC_Os09g37280Os.8278.1.S1_at10/119+21537399..21542468MaoC like domain containing protein, expressed
LOC_Os09g37290OsAffx.30166.1.S1_at11/119+21543393..21543697hypothetical protein
LOC_Os09g37300Os.50458.1.S1_at11/119+21543867..21546744Sodium/hydrogen exchanger family protein, expressed
LOC_Os09g37300OsAffx.11114.1.S1_x_at1/119+21543867..21546744Sodium/hydrogen exchanger family protein, expressed
LOC_Os09g37300OsAffx.11114.1.S1_at1/119+21543867..21546744Sodium/hydrogen exchanger family protein, expressed
LOC_Os09g37310OsAffx.382.1.S1_at2/119+21550279..21556824retrotransposon protein, putative, unclassified
LOC_Os09g37310OsAffx.21756.1.S1_at1/119+21550279..21556824retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005089molecular_functionRho guanyl-nucleotide exchange factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10858.1.S1_at--1091--7151Chr09:21526039..21526063 (25 bp)
GTCTGGACGTATGCCGGGAACCTTA
LOC_Os09g37270
Os.10858.1.S1_at--349--8051Chr09:21525997..21526021 (25 bp)
GGAGATGCCCCTGAAAGAGACTGAA
LOC_Os09g37270
Os.10858.1.S1_at--760--7151Chr09:21525937..21525961 (25 bp)
GTCTCAGCAAGGTCAACAGGTTTCA
LOC_Os09g37270
Os.10858.1.S1_at--900--551Chr09:21525908..21525932 (25 bp)
ATCCTGTTCTGGTCTCTAGCTAGAT
LOC_Os09g37270
Os.10858.1.S1_at--965--8671Chr09:21525849..21525873 (25 bp)
TGTGCTTTCTTAGCGAGCCAAGGGT
LOC_Os09g37270
Os.10858.1.S1_at--229--9411Chr09:21525825..21525849 (25 bp)
TCGTCTAGCCCTACTTACAACAAGT
LOC_Os09g37270
Os.10858.1.S1_at--571--2011Chr09:21525791..21525815 (25 bp)
ACTCTTTGAGTCTTGATCGCATCTG
LOC_Os09g37270
Os.10858.1.S1_at--152--1171Chr09:21525762..21525786 (25 bp)
AGTCATAGTTTCACGTAGCTGCCTC
LOC_Os09g37270
Os.10858.1.S1_at--372--7191Chr09:21525736..21525760 (25 bp)
GTCGGACATGTACTCTTCTTGTTCA
LOC_Os09g37270
Os.10858.1.S1_at--1050--6171Chr09:21525631..21525655 (25 bp)
GAGGCATCGGTTCCCTAACAATCAA
LOC_Os09g37270
Os.10858.1.S1_at--102--8131Chr09:21525548..21525572 (25 bp)
GGACAGATCTGACGCTCTTCAGTGA
LOC_Os09g37270
Target Sequence 
GTCTGGACGTATGCCGGGAACCTTAGCGCAAGGAAAGACGCAGGAGATGCCCCTGAAAGAGACTGAAAGGCAGTGAAGAA
AGTTCTTCAGATCTTTAGACGTGTCTCAGCAAGGTCAACAGGTTTCAACACATCCTGTTCTGGTCTCTAGCTAGATTTTC
CCTGTACAGAAGCAACATGATTCATTTTTTTGTGCTTTCTTAGCGAGCCAAGGGTCGTCTAGCCCTACTTACAACAAGTA
AGGGAATGACTCTTTGAGTCTTGATCGCATCTGAACAAGTCATAGTTTCACGTAGCTGCCTCTGTCGGACATGTACTCTT
CTTGTTCATGTTTATACTAGCTGGTTTAGTTAGCAGCAAGTGATTGAACTTCAGATGCTGCAGTTCTTTTTTTTTTTTTT
TTTGTCCCTGGAGGCATCGGTTCCCTAACAATCAACTGCACTTNCAGTGCAATGTATCATGATTTTCTGATGCTGTTGTA
TATGGCACCTAATGGACAGATCTGACGCTCTTCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis