Browse Element(s) Details


Os.10877.1.S1_at

Description gb:AK065709.1
DB_XREF= gi:32975727
TID=Os.10877.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431G06.23 (P0431G06.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039J02, full insert sequence.
FL= gb:AK065709.1 gb:AK104335.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7248011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72410Os.5540.3.S1_x_at11/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72410Os.5540.1.A1_at10/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72420Os.5540.2.S1_at11/111+42326677..42329626C2 domain containing protein, expressed
LOC_Os01g72430Os.26479.1.A1_a_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.2.S1_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_x_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_at10/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72440OsAffx.24014.1.S1_at11/111+42338035..42338356hypothetical protein
LOC_Os01g72450Os.42819.1.S1_x_at11/111+42339586..42340430DNA-binding protein, putative, expressed
LOC_Os01g72450Os.42819.1.S1_at11/111+42339586..42340430DNA-binding protein, putative, expressed
LOC_Os01g72460Os.24906.1.S1_at10/111+42344922..42346355NADPH:quinone oxidoreductase, putative, expressed
LOC_Os01g72470Os.51382.1.S1_at11/111+42347709..42348313expressed protein
LOC_Os01g72480Os.10877.1.S1_at11/111+42352542..42354833Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g72490Os.9355.1.S1_at11/111+42364026..42366470lateral root primordium 1, putative, expressed
LOC_Os01g72500OsAffx.25007.2.S1_s_at8/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72500OsAffx.25007.2.S1_at7/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72500OsAffx.25007.1.S1_at6/111+42367975..42369762retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10877.1.S1_at--234--4811Chr01:42354261..42354285 (25 bp)
GCTCTGAAGCGTGAAGCTGCTGATA
LOC_Os01g72480
Os.10877.1.S1_at--916--1751Chr01:42354313..42354337 (25 bp)
ACCTCCAGAGGTTGGGCCTCAGGAA
LOC_Os01g72480
Os.10877.1.S1_at--192--6171Chr01:42354369..42354393 (25 bp)
GAGGTTGAACCTCAGCTGAACGAGT
LOC_Os01g72480
Os.10877.1.S1_at--1067--5351Chr01:42354428..42354452 (25 bp)
GAAGAAAACTGCAGCCCTTGGGTCA
LOC_Os01g72480
Os.10877.1.S1_at--647--7551Chr01:42354486..42354510 (25 bp)
GTGGCCTTGTATCGTTGGCAAACTT
LOC_Os01g72480
Os.10877.1.S1_at--1023--2371Chr01:42354505..42354529 (25 bp)
AAACTTGCCGATTTGTACAGTACTT
LOC_Os01g72480
Os.10877.1.S1_at--33--6331Chr01:42354587..42354611 (25 bp)
GATGCAATGCGGTTTACCTCAATCT
LOC_Os01g72480
Os.10877.1.S1_at--1068--6451Chr01:42354612..42354636 (25 bp)
GATAATACTTTCAGTTACCGGGATT
LOC_Os01g72480
Os.10877.1.S1_at--114--5291Chr01:42354670..42354694 (25 bp)
GAATGTCAGTTGCTAGCTCTGCTAG
LOC_Os01g72480
Os.10877.1.S1_at--889--2991Chr01:42354727..42354751 (25 bp)
AATGTTGCATGTGACTATCCTCCGA
LOC_Os01g72480
Os.10877.1.S1_at--226--3191Chr01:42354804..42354828 (25 bp)
CAATGAATCTTCTAACCAGCGTTAT
LOC_Os01g72480
Target Sequence 
GCTCTGAAGCGTGAAGCTGCTGATAAGGCAGCTGCAGAAAAGCACTTGAAGCACCTCCAGAGGTTGGGCCTCAGGAAGGC
ACCCGAAGCAACAGCTGAAGCAACTCCAGAGGTTGAACCTCAGCTGAACGAGTGATTTTCNCCAACTTCTGTAGATAATG
GTGCTGTGAAGAAAACTGCAGCCCTTGGGTCACCCGAATAATCTTCCATTGTGAAGGACTGGAGCGTGGCCTTGTATCGT
TGGCAAACTTGCCGATTTGTACAGTACTTTAGTTTCNCAAATTACTNGTAGCATTGAACTGCACATCAGTNTGCNCCAGA
TGCGGCGATGCAATGCGGTTTACCTCAATCTGATAATACTTTCAGTTACCGGGATTCCTNTGCATGATGCAGAGGACCCT
GAACTAGGAGAATGTCAGTTGCTAGCTCTGCTAGTATTNTGTGCTGCAATGTATCAGTTTAGATAGAATGTTGCATGTGA
CTATCCTCCGATAAATGAAATGAGGAAACNGGTNTTCTTGCATGTATTGTGTGACTATCAGTTCAATGAATCTTCTAACC
AGCGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis