Browse Element(s) Details


Os.10885.1.S1_at

Description gb:AK059785.1
DB_XREF= gi:32969803
TID=Os.10885.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10885 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D07, full insert sequence.
FL= gb:AK067586.1 gb:AK100129.1 gb:AK059785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2065011/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20590Os.48200.2.S1_at11/119+12406494..12412334expressed protein
LOC_Os09g20590Os.48200.1.S1_x_at10/119+12406494..12412334expressed protein
LOC_Os09g20600NANA9+12415811..12416083hypothetical protein
LOC_Os09g20610NANA9+12420501..12422187retrotransposon protein, putative, unclassified
LOC_Os09g20620NANA9+12423144..12424987retrotransposon protein, putative, LINE subclass
LOC_Os09g20630Os.52436.1.S1_at11/119+12427220..12429822ASC1-like protein 1, putative, expressed
LOC_Os09g20640Os.49852.1.S1_at11/119+12430006..12433573Protein kinase domain containing protein, expressed
LOC_Os09g20650Os.10885.1.S1_at11/119+12435990..12438215F-box protein interaction domain containing protein, expressed
LOC_Os09g20660Os.23191.1.S1_at11/119+12442364..12444865Brain protein 44, putative, expressed
LOC_Os09g20670OsAffx.1586.2.A1_s_at11/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_x_at9/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_at8/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.2.A1_at6/119+12446164..12447018hypothetical protein
LOC_Os09g20684Os.56245.1.S1_at11/119+12453424..12459995Strictosidine synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10885.1.S1_at--328--9591Chr09:12436544..12436568 (25 bp)
TCATTGCCATGGTTGATGCCTTCAT
LOC_Os09g20650
Os.10885.1.S1_at--911--6351Chr09:12436530..12436554 (25 bp)
GATGCCTTCATGTTATTTTACTCCA
LOC_Os09g20650
Os.10885.1.S1_at--605--8311Chr09:12436461..12436485 (25 bp)
GGCTCGGAACCTCTACTGTTATGAT
LOC_Os09g20650
Os.10885.1.S1_at--696--5251Chr09:12436397..12436421 (25 bp)
GAATCTGAGTTTCCTTTTAGCACAC
LOC_Os09g20650
Os.10885.1.S1_at--180--5571Chr09:12436361..12436385 (25 bp)
GAAAGCATAGTTCCTCTGCGCAAAG
LOC_Os09g20650
Os.10885.1.S1_at--61--391Chr09:12436299..12436323 (25 bp)
ATCACTTGTTTTCCAGATGTTCCGC
LOC_Os09g20650
Os.10885.1.S1_at--192--6291Chr09:12436284..12436308 (25 bp)
GATGTTCCGCAGTTCACAGAATTAC
LOC_Os09g20650
Os.10885.1.S1_at--755--10031Chr09:12436205..12436229 (25 bp)
TAGAGTGGCCTATTTTACCGTGAAT
LOC_Os09g20650
Os.10885.1.S1_at--533--51Chr09:12436155..12436179 (25 bp)
ATTGAAACCTCCTTACAGCACATGC
LOC_Os09g20650
Os.10885.1.S1_at--546--3411Chr09:12436140..12436164 (25 bp)
CAGCACATGCTTGTCTGACTTCTAA
LOC_Os09g20650
Os.10885.1.S1_at--607--10791Chr09:12436020..12436044 (25 bp)
TTGTTGCCATTTTAGGTGACCTTTT
LOC_Os09g20650
Target Sequence 
TCATTGCCATGGTTGATGCCTTCATGTTATTTTACTCCAAAACACACTTTGTTCCATGAGGGAAAAATTTGGGTTCAGTT
GTTGGCTCGGAACCTCTACTGTTATGATCCAAGTTCAAGCTCCACTGAACTGAAGATGGCATGTCCAGAATCTGAGTTTC
CTTTTAGCACACATACTTTCATTGAAAGCATAGTTCCTCTGCGCAAAGATTACTTCATCAAGCAGATACAGTGATAATGG
TGTTCATCACTTGTTTTCCAGATGTTCCGCAGTTCACAGAATTACAAAATTGTGCCCCNTTTTTCCTTTTCCGTTGATGA
ATTTTAGCTGGTCAATGACTTAGAGTGGCCTATTTTACCGTGAATTGTAATTAGCTAAAATAAATGCAGTATTGAAACCT
CCTTACAGCACATGCTTGTCTGACTTCTAATTGATGTGCTTGTTTCTAACTTCNNNTTATGATGCTAAATTGATATGACG
AGTTGAGAAAGAGAGGTTGTTCAGTTTTTACTTTACTTTGAATTATTGTTGCCATTTTAGGTGACCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis