Browse Element(s) Details


Os.10949.1.S1_at

Description gb:AK059469.1
DB_XREF= gi:32969487
TID=Os.10949.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative adapter protein SPIKE1 (OSJNBb0014I10.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D11, full insert sequence.
FL= gb:AK059469.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2108011/11Guanine nucleotide exchange factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21070OsAffx.12963.1.S1_at11/113+11966381..11967148hypothetical protein
LOC_Os03g21080Os.10949.1.S1_at11/113+11981181..11986623Guanine nucleotide exchange factor, putative, expressed
LOC_Os03g21090Os.31565.1.S1_at11/113+11987024..11991337Axi 1 protein, putative, expressed
LOC_Os03g21100OsAffx.10065.1.S1_at11/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g21100Os.53970.1.S1_at1/113+11992096..11995314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g21110OsAffx.12964.1.S1_at10/113+11998042..12000162emp24/gp25L/p24 family protein
LOC_Os03g21120Os.8675.1.S1_at11/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21120OsAffx.10053.1.S1_x_at1/113+12000616..12006112Nucleoside-triphosphatase, putative, expressed
LOC_Os03g21130OsAffx.22502.1.S1_x_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130OsAffx.22502.1.S1_at10/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.5967.1.S1_x_at3/113+12007759..12014194hypothetical protein
LOC_Os03g21130Os.53420.1.S1_x_at3/113+12007759..12014194hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10949.1.S1_at--1038--2651Chr03:11985932..11985956 (25 bp)
AAGCCTGCAGAGGATACTCCAAGGA
LOC_Os03g21080
Os.10949.1.S1_at--1075--1971Chr03:11986117..11986141 (25 bp)
ACTGCATTCTTATCTGGTGAGCCCG
LOC_Os03g21080
Os.10949.1.S1_at--580--2531Chr03:11986143..11986167 (25 bp)
AACTAGGCTCCGATCTCAAGAACTG
LOC_Os03g21080
Os.10949.1.S1_at--85--1591Chr03:11986172..11986196 (25 bp)
AGCTCATCGCTGCATTGCTGGAATT
LOC_Os03g21080
Os.10949.1.S1_at--1066--51Chr03:11986185..11986209 (25 bp)
ATTGCTGGAATTCATGGCCGTCTGC
LOC_Os03g21080
Os.10949.1.S1_at--654--8211Chr03:11986257..11986281 (25 bp)
GGAATTCCACACTCAACTAGTCAAT
LOC_Os03g21080
Os.10949.1.S1_at--109--10071Chr03:11986274..11986298 (25 bp)
TAGTCAATGGCTTTCAGTCGCTCAC
LOC_Os03g21080
Os.10949.1.S1_at--1031--5911Chr03:11986303..11986327 (25 bp)
GAGCTTTCACACTATATTCCTGCAA
LOC_Os03g21080
Os.10949.1.S1_at--563--2531Chr03:11986458..11986482 (25 bp)
AACTAGGCTTTTCAATTCTGTTCTG
LOC_Os03g21080
Os.10949.1.S1_at--1062--8791Chr03:11986476..11986500 (25 bp)
TGTTCTGTTTGCAATGCCGTGCCAC
LOC_Os03g21080
Os.10949.1.S1_at--592--7471Chr03:11986534..11986558 (25 bp)
GTGTGTTGTATCTCTATTACCTTGT
LOC_Os03g21080
Target Sequence 
AAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATTAAGTGTGTGCACTGCATTCTTAT
CTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGC
AAGCGCGCAATNCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACTAGTCAATGGCTTTCA
GTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTATAACTGTATTCTAGCAAGCTGGCAAGTA
GGTAGCATTTGAATGGTTCATTCTTTCAGTTGGGGCTCCCCACCNTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTC
TGGAAAACTAACTAGGCTTTTCAATTCTGTTCTGTTTGCAATGCCGTGCCACGATTTTGGGGGTGTAAAGCTTGTGTAAT
CCTTAGTGTGTTGTATCTCTATTACCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis