Browse Element(s) Details


Os.10953.1.A1_at

Description gb:AU068637
DB_XREF= gi:5003488
DB_XREF=AU068637
CLONE=C30618_7Z
TID=Os.10953.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10953 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_172751.1 (A.thaliana) flower pigmentation protein ATAN11 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3243011/11WD40 repeat protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32400OsAffx.24537.1.S1_at10/112+19151963..19155044plastid ribosomal protein L19 precursor, putative
LOC_Os02g32400Os.9470.1.S1_at1/112+19151963..19155044plastid ribosomal protein L19 precursor, putative
LOC_Os02g32410OsAffx.24538.1.S1_at11/112+19156989..19157591hypothetical protein
LOC_Os02g32420OsAffx.2829.1.S1_at11/112+19160680..19162080expressed protein
LOC_Os02g32420OsAffx.2829.1.S1_x_at11/112+19160680..19162080expressed protein
LOC_Os02g32430Os.10953.1.A1_at11/112+19171915..19173974WD40 repeat protein, putative, expressed
LOC_Os02g32440NANA2+19174366..19175550expressed protein
LOC_Os02g32450Os.51245.1.S1_at11/112+19180457..19181216expressed protein
LOC_Os02g32460Os.27153.1.S1_at11/112+19186632..19191203Molybdenum cofactor synthesis protein 3, putative, expressed
LOC_Os02g32470NANA2+19197378..19197800hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009957biological_processepidermal cell fate specification
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
GO:0045165biological_processcell fate commitment
GO:0000166molecular_functionnucleotide binding
GO:0008134molecular_functiontranscription factor binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10953.1.A1_at--527--7811Chr02:19172837..19172861 (25 bp)
GGTCTTGATCCCATATTGGCGTACA
LOC_Os02g32430
Os.10953.1.A1_at--770--51Chr02:19172798..19172822 (25 bp)
ATTGAGCAGCTCCAATGGTCAGCGA
LOC_Os02g32430
Os.10953.1.A1_at--320--8951Chr02:19172766..19172790 (25 bp)
TGACTGGGTCGCTATTGCATTCTCC
LOC_Os02g32430
Os.10953.1.A1_at--468--9831Chr02:19172739..19172763 (25 bp)
TAAACTGCAGATCCTCAGGGTCTGA
LOC_Os02g32430
Os.10953.1.A1_at--727--3471Chr02:19172724..19172748 (25 bp)
CAGGGTCTGATTTCTTTGTTCCAAC
LOC_Os02g32430
Os.10953.1.A1_at--881--8831Chr02:19172587..19172611 (25 bp)
TGATATGCGCGCTGAGTTGGTTCTA
LOC_Os02g32430
Os.10953.1.A1_at--570--6791Chr02:19172455..19172479 (25 bp)
GTTATGTTTGTTGCTTGTTCTCGAA
LOC_Os02g32430
Os.10953.1.A1_at--615--5271Chr02:19172433..19172457 (25 bp)
GAATGTCCAGCTCCAGTAGGGCGTA
LOC_Os02g32430
Os.10953.1.A1_at--506--1191Chr02:19172419..19172443 (25 bp)
AGTAGGGCGTAGGTTCACCTCTTGA
LOC_Os02g32430
Os.10953.1.A1_at--391--3371Chr02:19172404..19172428 (25 bp)
CACCTCTTGACTTCCATGTTGTATT
LOC_Os02g32430
Os.10953.1.A1_at--787--6631Chr02:19172387..19172411 (25 bp)
GTTGTATTTTGCACTCGCCGTATAT
LOC_Os02g32430
Target Sequence 
GGTCTTGATCCCATATTGGCGTACACTGCTGGGGCAGAGATTGAGCAGCTCCAATGGTCAGCGACCCAGCCTGACTGGGT
CGCTATTGCATTCTCCACTAAACTGCAGATCCTCAGGGTCTGATTTCTTTGTTCCAACCCTNGTTAGTAAGGGGACATCG
ACAAGAACAAAGAAGGCCAGCATGGATAATGAGGTTAGGTGATCAGAGGACATTGTTACTTCAGTCTTATTTATTTTAAG
TTGTGCACAGATGATATGCGCGCTGAGTTGGTTCTAGTGATATAANAAATTGTTTCCTACCTAGAAGCTGGAATTGGCAA
TGAACTGAGCTGTTAGAGTAATTAGCTGCTCTAGGTTTAGTATTGATGTTAATGTGGATTGTAGTTATGTTTGTTGCTTG
TTCTCGAATGTCCAGCTCCAGTAGGGCGTAGGTTCACCTCTTGACTTCCATGTTGTATTTTGCACTCGCCGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10953.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis