Browse Element(s) Details


Os.10954.1.S1_at

Description gb:CB621496
DB_XREF= gi:29616484
DB_XREF=OSIIEa07G16.r
CLONE=OSIIEa07G16
TID=Os.10954.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.10954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1092_A07.13 (OJ1092_A07.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3799011/11Alpha 1,4-glycosyltransferase conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37940NANA7+22764427..22766233hypothetical protein
LOC_Os07g37950Os.30337.1.S1_at11/117+22772455..22773493disease resistance protein, putative, expressed
LOC_Os07g37960OsAffx.22483.1.S1_at11/117+22778414..22781911exostosin family protein, putative, expressed
LOC_Os07g37970OsAffx.16605.1.S1_at11/117+22783473..22785671Cytochrome P450 51, putative
LOC_Os07g37980OsAffx.28806.1.S1_at11/117+22787237..22789492Cytochrome P450 51, putative
LOC_Os07g37990Os.10954.1.S1_at11/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g37990Os.18186.1.S1_at1/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g38000Os.37602.2.S1_x_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38000Os.37602.1.S1_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38010NANA7+22800855..22801187hypothetical protein
LOC_Os07g38020OsAffx.16606.1.A1_at3/117+22803962..22804693hypothetical protein
LOC_Os07g38030Os.37032.1.S1_a_at11/117+22806023..22807670GRAS family transcription factor containing protein, expressed
LOC_Os07g38040OsAffx.28808.1.S1_at11/117+22810054..22810287expressed protein
LOC_Os07g38050OsAffx.22479.1.S1_x_at11/117+22814061..22815137hypothetical protein
LOC_Os07g38060Os.33891.1.S1_at11/117+22815501..22820481expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10954.1.S1_at--54--2491Chr07:22791835..22791859 (25 bp)
AACAGTGGGCATCTTGACATAAAGT
LOC_Os07g37990
Os.10954.1.S1_at--795--5431Chr07:22791808..22791832 (25 bp)
GAACCTTCTGTTGCATTTTATCCCA
LOC_Os07g37990
Os.10954.1.S1_at--1136--5871Chr07:22790521..22790545 (25 bp)
GAGCCCAACATGATGCTCTGTTTTC
LOC_Os07g37990
Os.10954.1.S1_at--1027--7031Chr07:22790489..22790513 (25 bp)
GTAAATGACTCTACTACTTTCCACC
LOC_Os07g37990
Os.10954.1.S1_at--8--4291Chr07:22790435..22790459 (25 bp)
CCTGAACCCAACTCTCTTGTTGAGA
LOC_Os07g37990
Os.10954.1.S1_at--398--10771Chr07:22790416..22790440 (25 bp)
TTGAGAGAATCCTTAACCGTTACTG
LOC_Os07g37990
Os.10954.1.S1_at--240--9931Chr07:22790396..22790420 (25 bp)
TACTGTCTTCATTGCCTTGATGTTT
LOC_Os07g37990
Os.10954.1.S1_at--1103--6831Chr07:22790367..22790391 (25 bp)
GTTTGTAGCGGGTTGAAGTTCTGAC
LOC_Os07g37990
Os.10954.1.S1_at--935--2491Chr07:22790194..22790218 (25 bp)
AACAGGGCTGCAGTGTTGGTGCTAC
LOC_Os07g37990
Os.10954.1.S1_at--1078--6611Chr07:22790180..22790204 (25 bp)
GTTGGTGCTACAGGCATGTACAATT
LOC_Os07g37990
Os.10954.1.S1_at--1097--8151Chr07:22790105..22790129 (25 bp)
GGAAACACTCAACTCAAGAACTAGA
LOC_Os07g37990
Target Sequence 
AACAGTGGGCATCTTGACATAAAGTTTGAACCTTCTGTTGCATTTTATCCCATAAGCTCNACAGATATTACAAGGTACTT
CTCAGAAGCAGATAGCACGGATGAAAGAGCCCAACATGATGCTCTGTTTTCTAGGATTGTAAATGACTCTACTACTTTCC
ACCTCTGGAACAGCANTACTTCTTCGCTGGTTCCTGAACCCAACTCTCTTGTTGAGAGAATCCTTAACCGTTACTGTCTT
CATTGCCTTGATGTTTTATAGTTTGTAGCGGGTTGAAGTTCTGACGAAGAGCTTCATTTTGGGTTAGAATACATATACAG
AAGAAATTCATGAGTTTAATGGGCGACAATATGGCTAGTAGTATATTGTTGAATTTTGCCCAAAAATTAGTTGGGGGGAT
AAAATGGTGGCATTGTAGATATATATTCTTTTCAACAGGGCTGCAGTGTTGGTGCTACAGGCATGTACAATTGTGTTGAC
CTNACTACCCNTTGTCACTTTTTGACAGCAGATTTGCTTACTGGAAACACTCAACTCAAGAACTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis