Browse Element(s) Details


Os.10956.1.S1_at

Description gb:AK059601.1
DB_XREF= gi:32969619
TID=Os.10956.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10956 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-E07, full insert sequence.
FL= gb:AK103342.1 gb:AK059601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6237011/11ENTH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62320OsAffx.22699.1.S1_x_at2/111+36395568..36400018retrotransposon protein, putative, unclassified
LOC_Os01g62320Os.45161.1.A1_x_at1/111+36395568..36400018retrotransposon protein, putative, unclassified
LOC_Os01g62330NANA1+36400730..36402523retrotransposon protein, putative, unclassified
LOC_Os01g62340NANA1+36402921..36406125hypothetical protein
LOC_Os01g62350Os.6823.1.S1_at11/111+36409967..3641250360S ribosomal protein L36-2, putative, expressed
LOC_Os01g62360Os.36319.1.S1_at11/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S1_x_at10/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S2_at5/111+36416028..36418407hypothetical protein
LOC_Os01g62370Os.10956.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62370Os.42477.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S1_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S2_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62390Os.6301.1.S1_at11/111+36432257..36434864Growth regulator protein, putative, expressed
LOC_Os01g62400Os.55656.1.S1_at9/111+36444018..36445236hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10956.1.S1_at--482--3811Chr01:36423183..36423207 (25 bp)
CTCCTGAGCCAGTAGTGATCGTTTG
LOC_Os01g62370
Os.10956.1.S1_at--478--7731Chr01:36423208..36423232 (25 bp)
GGTGGATGGTTCTTCGTCGATCGCA
LOC_Os01g62370
Os.10956.1.S1_at--530--7211Chr01:36423223..36423247 (25 bp)
GTCGATCGCATCGTTCGTTGGTTTG
LOC_Os01g62370
Os.10956.1.S1_at--690--9831Chr01:36423270..36423294 (25 bp)
TAAAGTCAGTGGCTTGCTGGCATCC
LOC_Os01g62370
Os.10956.1.S1_at--934--10711Chr01:36423283..36423307 (25 bp)
TTGCTGGCATCCTCTTTGTGATGAC
LOC_Os01g62370
Os.10956.1.S1_at--1041--7351Chr01:36423300..36423324 (25 bp)
GTGATGACCCTTTTGTAATCGTCGT
LOC_Os01g62370
Os.10956.1.S1_at--1044--8691Chr01:36423313..36423337 (25 bp)
TGTAATCGTCGTCCTTAATTTCAGT
LOC_Os01g62370
Os.10956.1.S1_at--654--3051Chr01:36423442..36423466 (25 bp)
AATACACCTGACATGAATCCGGACA
LOC_Os01g62370
Os.10956.1.S1_at--182--5451Chr01:36423501..36423525 (25 bp)
GAACCGATGCAGTGAAATTCTCTCT
LOC_Os01g62370
Os.10956.1.S1_at--565--3151Chr01:36423516..36423540 (25 bp)
AATTCTCTCTGCTATACTCCAGAGT
LOC_Os01g62370
Os.10956.1.S1_at--554--3691Chr01:36423577..36423601 (25 bp)
CTAGGCCTGGTTTAGGTCGTGTTTG
LOC_Os01g62370
Target Sequence 
CTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGGTTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAA
AATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGA
TTTCTGAAANNNNNANAAATGCNTGANTCCCTGANGCTCATAAACACACGNAGAAAGGAAATTTTGAGAAGTTGGAAGCT
TCAAGCTGGCAATTNCAGGCAAATACACCTGACATGAATCCGGACAGGTACAAGGATCGTGAAAAGACATGCGAATGGAT
GAACCGATGCAGTGAAATTCTCTCTGCTATACTCCAGAGTCCAGAATGTGATATGCTGAACTGATCAGAANCAGACCTAG
GCCTGGTTTAGGTCGTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis