Browse Element(s) Details


Os.42477.1.S1_at

Description gb:NM_190537.1
DB_XREF= gi:34908157
GEN=P0408C03.22
TID=Os.42477.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0408C03.22 (P0408C03.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0408C03.22 (P0408C03.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6237011/11ENTH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62320OsAffx.22699.1.S1_x_at2/111+36395568..36400018retrotransposon protein, putative, unclassified
LOC_Os01g62320Os.45161.1.A1_x_at1/111+36395568..36400018retrotransposon protein, putative, unclassified
LOC_Os01g62330NANA1+36400730..36402523retrotransposon protein, putative, unclassified
LOC_Os01g62340NANA1+36402921..36406125hypothetical protein
LOC_Os01g62350Os.6823.1.S1_at11/111+36409967..3641250360S ribosomal protein L36-2, putative, expressed
LOC_Os01g62360Os.36319.1.S1_at11/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S1_x_at10/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S2_at5/111+36416028..36418407hypothetical protein
LOC_Os01g62370Os.10956.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62370Os.42477.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S1_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S2_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62390Os.6301.1.S1_at11/111+36432257..36434864Growth regulator protein, putative, expressed
LOC_Os01g62400Os.55656.1.S1_at9/111+36444018..36445236hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42477.1.S1_at--1106--491Chr01:36422675..36422699 (25 bp)
CATCGACGAGAAAGGGTCCGTTTCA
LOC_Os01g62370
Os.42477.1.S1_at--38--11Chr01:36422691..36422715 (25 bp)
TCCGTTTCAATTCTTCGTCCCGACT
LOC_Os01g62370
Os.42477.1.S1_at--1113--111Chr01:36422700..36422724 (25 bp)
ATTCTTCGTCCCGACTCGATCATAT
LOC_Os01g62370
Os.42477.1.S1_at--898--5711Chr01:36422712..36422736 (25 bp)
GACTCGATCATATCTTCTCCTGATG
LOC_Os01g62370
Os.42477.1.S1_at--430--4051Chr01:36422716..36422740 (25 bp)
CGATCATATCTTCTCCTGATGTTCT
LOC_Os01g62370
Os.42477.1.S1_at--1091--3851Chr01:36422731..36422755 (25 bp)
CTGATGTTCTCTCGCCCTTCTTTCT
LOC_Os01g62370
Os.42477.1.S1_at--233--9551Chr01:36422749..36422773 (25 bp)
TCTTTCTCATCACCGATGGTTTCTT
LOC_Os01g62370
Os.42477.1.S1_at--728--3351Chr01:36422759..36422783 (25 bp)
CACCGATGGTTTCTTCTTGAATCCG
LOC_Os01g62370
Os.42477.1.S1_at--545--6251Chr01:36422763..36422787 (25 bp)
GATGGTTTCTTCTTGAATCCGAGTT
LOC_Os01g62370
Os.42477.1.S1_at--610--10311Chr01:36422768..36422792 (25 bp)
TTTCTTCTTGAATCCGAGTTGCAGT
LOC_Os01g62370
Os.42477.1.S1_at--423--3031Chr01:36422778..36422802 (25 bp)
AATCCGAGTTGCAGTTTCAACTGGG
LOC_Os01g62370
Target Sequence 
CATCGACGAGAAAGGGTCCGTTTCAATTCTTCGTCCCGACTCGATCATATCTTCTCCTGATGTTCTCTCGCCCTTCTTTC
TCATCACCGATGGTTTCTTCTTGAATCCGAGTTGCAGTTTCAACTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis